miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18751 5' -53.4 NC_004683.1 + 20574 0.66 0.84453
Target:  5'- cGGgGCGUCUggUGGCGGCg---GUGCg -3'
miRNA:   3'- cCCgUGCGGAa-GCUGCCGaaguUACG- -5'
18751 5' -53.4 NC_004683.1 + 47972 0.66 0.84453
Target:  5'- gGGGCugGCUg--GACucaGCUUC-GUGCa -3'
miRNA:   3'- -CCCGugCGGaagCUGc--CGAAGuUACG- -5'
18751 5' -53.4 NC_004683.1 + 46220 0.66 0.84453
Target:  5'- uGGCcaucagccACGCCUggaACGGCUgcCAGUGCc -3'
miRNA:   3'- cCCG--------UGCGGAagcUGCCGAa-GUUACG- -5'
18751 5' -53.4 NC_004683.1 + 51848 0.66 0.842783
Target:  5'- aGGGCcuCGCgUUUGGCGGCgaaguacucggCGAggGCg -3'
miRNA:   3'- -CCCGu-GCGgAAGCUGCCGaa---------GUUa-CG- -5'
18751 5' -53.4 NC_004683.1 + 13444 0.66 0.839262
Target:  5'- uGGGUggcagcgcguuccccGCGCaggguggCGGCGGCUUcCAggGCg -3'
miRNA:   3'- -CCCG---------------UGCGgaa----GCUGCCGAA-GUuaCG- -5'
18751 5' -53.4 NC_004683.1 + 4929 0.66 0.835706
Target:  5'- cGGCAaGCCUcagagCGGCGGCcagCGgcgcAUGCg -3'
miRNA:   3'- cCCGUgCGGAa----GCUGCCGaa-GU----UACG- -5'
18751 5' -53.4 NC_004683.1 + 17345 0.66 0.835706
Target:  5'- gGGGCGCGacauCUuccgCGGCGGCcUCA-UGUc -3'
miRNA:   3'- -CCCGUGCg---GAa---GCUGCCGaAGUuACG- -5'
18751 5' -53.4 NC_004683.1 + 9778 0.66 0.835705
Target:  5'- aGGUACGCCUcaCGGuCGGCcaccgcgUUGGUGCc -3'
miRNA:   3'- cCCGUGCGGAa-GCU-GCCGa------AGUUACG- -5'
18751 5' -53.4 NC_004683.1 + 51617 0.66 0.833914
Target:  5'- cGGCGCGCCUgccgugcgUGAUGGaucaggucgcCGAUGCc -3'
miRNA:   3'- cCCGUGCGGAa-------GCUGCCgaa-------GUUACG- -5'
18751 5' -53.4 NC_004683.1 + 56394 0.66 0.826664
Target:  5'- -uGCAUGgCguaggCGACGGCgugCAGUGUg -3'
miRNA:   3'- ccCGUGCgGaa---GCUGCCGaa-GUUACG- -5'
18751 5' -53.4 NC_004683.1 + 23419 0.66 0.826664
Target:  5'- cGGCcgcgaACGCCUUCaugauGCGGCUcggGAUGCc -3'
miRNA:   3'- cCCG-----UGCGGAAGc----UGCCGAag-UUACG- -5'
18751 5' -53.4 NC_004683.1 + 4036 0.66 0.821139
Target:  5'- cGGUAagGCCaUCGACGGCaugUCGuuccgguucucggugGUGCg -3'
miRNA:   3'- cCCGUg-CGGaAGCUGCCGa--AGU---------------UACG- -5'
18751 5' -53.4 NC_004683.1 + 47742 0.66 0.817415
Target:  5'- aGGCACacaCCgUCGucGCGGCgUUCGAUGUc -3'
miRNA:   3'- cCCGUGc--GGaAGC--UGCCG-AAGUUACG- -5'
18751 5' -53.4 NC_004683.1 + 17835 0.66 0.817415
Target:  5'- cGGGCccggguCGCCcUUGACcaGGCcggCGAUGCc -3'
miRNA:   3'- -CCCGu-----GCGGaAGCUG--CCGaa-GUUACG- -5'
18751 5' -53.4 NC_004683.1 + 637 0.66 0.807969
Target:  5'- cGGCAUcgacucgaaugGCCggUCGACGGCgUUCGAg-- -3'
miRNA:   3'- cCCGUG-----------CGGa-AGCUGCCG-AAGUUacg -5'
18751 5' -53.4 NC_004683.1 + 8244 0.66 0.807968
Target:  5'- uGGcCGCgGCCUUCG-CGGCcUCGGcGCc -3'
miRNA:   3'- cCC-GUG-CGGAAGCuGCCGaAGUUaCG- -5'
18751 5' -53.4 NC_004683.1 + 4733 0.66 0.807968
Target:  5'- cGGGcCACGCUUgcccaugcCGAUGGCacgcaggcCGGUGCg -3'
miRNA:   3'- -CCC-GUGCGGAa-------GCUGCCGaa------GUUACG- -5'
18751 5' -53.4 NC_004683.1 + 18254 0.66 0.806057
Target:  5'- cGGCGacgaGCCggugaccgugaCGGCGGCUUCGggGUc -3'
miRNA:   3'- cCCGUg---CGGaa---------GCUGCCGAAGUuaCG- -5'
18751 5' -53.4 NC_004683.1 + 7414 0.66 0.804138
Target:  5'- cGGGCGCGCUgccacauuccacaUCGACgGGCcgaUCA-UGCc -3'
miRNA:   3'- -CCCGUGCGGa------------AGCUG-CCGa--AGUuACG- -5'
18751 5' -53.4 NC_004683.1 + 9420 0.67 0.798336
Target:  5'- uGGGCugGauucCUUUCGugGGCUg----GCu -3'
miRNA:   3'- -CCCGugC----GGAAGCugCCGAaguuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.