miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18752 5' -55.7 NC_004683.1 + 55784 0.66 0.682888
Target:  5'- -cGGUcgccGCCGACGAcGCCAGcguugagCAGCGg -3'
miRNA:   3'- caCCGua--CGGCUGCU-CGGUUa------GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 28701 0.66 0.682888
Target:  5'- -cGGCuucagaucccGUGUCGACGAGCauggcugCGGCAc -3'
miRNA:   3'- caCCG----------UACGGCUGCUCGguua---GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 20230 0.66 0.681787
Target:  5'- cUGGCgcagucgGUGCCGGguauCG-GCgCGAUCAGCAa -3'
miRNA:   3'- cACCG-------UACGGCU----GCuCG-GUUAGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 2485 0.66 0.671852
Target:  5'- -aGGCGccaauuccGUCGACGGGCCGGcCAGUg -3'
miRNA:   3'- caCCGUa-------CGGCUGCUCGGUUaGUCGu -5'
18752 5' -55.7 NC_004683.1 + 15688 0.66 0.660777
Target:  5'- -cGGCGUGCCcGCG-GCCAcgaucuucgaGUCuGCGu -3'
miRNA:   3'- caCCGUACGGcUGCuCGGU----------UAGuCGU- -5'
18752 5' -55.7 NC_004683.1 + 42616 0.66 0.660777
Target:  5'- gGUGGUcgGCgaccgCGACGAcGCCcgcgacgaGAUCGGCGg -3'
miRNA:   3'- -CACCGuaCG-----GCUGCU-CGG--------UUAGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 18553 0.66 0.657448
Target:  5'- -cGGCGucUGCCGcauccauucggggaGCGGGUCGGUCAcgGCAg -3'
miRNA:   3'- caCCGU--ACGGC--------------UGCUCGGUUAGU--CGU- -5'
18752 5' -55.7 NC_004683.1 + 3489 0.66 0.649675
Target:  5'- -cGGCggGCU-ACGAGCCGgaAUCGGUg -3'
miRNA:   3'- caCCGuaCGGcUGCUCGGU--UAGUCGu -5'
18752 5' -55.7 NC_004683.1 + 2753 0.66 0.649675
Target:  5'- -cGGCG-GCCGcgGCGAGCUcggCGGCGg -3'
miRNA:   3'- caCCGUaCGGC--UGCUCGGuuaGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 12167 0.66 0.649675
Target:  5'- -cGGCAUGCCGGggcCGcGCuCAGgugggCGGCAg -3'
miRNA:   3'- caCCGUACGGCU---GCuCG-GUUa----GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 25958 0.66 0.638556
Target:  5'- -gGGC-UGuCCGACGGGCUGGgucUCGGUAu -3'
miRNA:   3'- caCCGuAC-GGCUGCUCGGUU---AGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 27070 0.66 0.627432
Target:  5'- uGUGGCuUGCCGAgGuGGCCGGccugccCGGCGc -3'
miRNA:   3'- -CACCGuACGGCUgC-UCGGUUa-----GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 5921 0.66 0.627432
Target:  5'- -aGGCGccuUGgCGGCGGuGCCGcgCGGCGa -3'
miRNA:   3'- caCCGU---ACgGCUGCU-CGGUuaGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 3057 0.66 0.627432
Target:  5'- aGUGG---GCCGACGAgGUCAA-CAGCAa -3'
miRNA:   3'- -CACCguaCGGCUGCU-CGGUUaGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 20395 0.66 0.626319
Target:  5'- cUGGCA-GCUGGCGgcgcacccggggcGGCCAAcggCGGCAc -3'
miRNA:   3'- cACCGUaCGGCUGC-------------UCGGUUa--GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 53658 0.67 0.616311
Target:  5'- -cGGCGgugcgGCCGGCGucuGCCg--CGGCGu -3'
miRNA:   3'- caCCGUa----CGGCUGCu--CGGuuaGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 15933 0.67 0.616311
Target:  5'- -cGGCcugGCCGAUGuuGCCGugCAGCAg -3'
miRNA:   3'- caCCGua-CGGCUGCu-CGGUuaGUCGU- -5'
18752 5' -55.7 NC_004683.1 + 30853 0.67 0.616311
Target:  5'- cGUGcGCA-GCCGACGGugcGCCGGUgcggucgaCAGCGg -3'
miRNA:   3'- -CAC-CGUaCGGCUGCU---CGGUUA--------GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 18264 0.67 0.616311
Target:  5'- -cGGCgAUGUccggCGACGAGCCGGUgaccgugaCGGCGg -3'
miRNA:   3'- caCCG-UACG----GCUGCUCGGUUA--------GUCGU- -5'
18752 5' -55.7 NC_004683.1 + 2530 0.67 0.616311
Target:  5'- gGUGGCAgcgcuUGCgCGACGggaAGCCGucggacacguUCGGCAg -3'
miRNA:   3'- -CACCGU-----ACG-GCUGC---UCGGUu---------AGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.