miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18753 3' -59.6 NC_004683.1 + 14291 0.66 0.550038
Target:  5'- gUCGCGGCCacgcaccagcaguuuGAucucaacCUCGGUGGGGcccugcagcgcgUCGAc -3'
miRNA:   3'- gAGCGCCGG---------------CUu------GAGCCGCCCU------------AGCU- -5'
18753 3' -59.6 NC_004683.1 + 40320 0.66 0.545919
Target:  5'- -aCGCGcGCCuGcAGCUCGGCGcGGGccugcUCGGc -3'
miRNA:   3'- gaGCGC-CGG-C-UUGAGCCGC-CCU-----AGCU- -5'
18753 3' -59.6 NC_004683.1 + 33253 0.66 0.545919
Target:  5'- --gGUGGUgauCGAacaGCUCGGCGaGAUCGAa -3'
miRNA:   3'- gagCGCCG---GCU---UGAGCCGCcCUAGCU- -5'
18753 3' -59.6 NC_004683.1 + 56282 0.66 0.545919
Target:  5'- aCUgGCGGCCGAgguagaagcugACgaugCgGGUGGGcgCGGu -3'
miRNA:   3'- -GAgCGCCGGCU-----------UGa---G-CCGCCCuaGCU- -5'
18753 3' -59.6 NC_004683.1 + 56571 0.66 0.545919
Target:  5'- -gUGCGGCCGGGCaugCGuCGGGAccugCGGu -3'
miRNA:   3'- gaGCGCCGGCUUGa--GCcGCCCUa---GCU- -5'
18753 3' -59.6 NC_004683.1 + 28274 0.66 0.545919
Target:  5'- cCUCGCGGCCGucggcuccGugUUGGCuGGcGUCa- -3'
miRNA:   3'- -GAGCGCCGGC--------UugAGCCGcCC-UAGcu -5'
18753 3' -59.6 NC_004683.1 + 3017 0.66 0.535666
Target:  5'- cCUgGuCGGCaCGAAuCUCGcGCaGGAUCGGc -3'
miRNA:   3'- -GAgC-GCCG-GCUU-GAGC-CGcCCUAGCU- -5'
18753 3' -59.6 NC_004683.1 + 7574 0.66 0.535666
Target:  5'- uUCGCaacucGGCCGAGgUCGacGCGGGcAUCa- -3'
miRNA:   3'- gAGCG-----CCGGCUUgAGC--CGCCC-UAGcu -5'
18753 3' -59.6 NC_004683.1 + 52489 0.66 0.525482
Target:  5'- uCUCGCGcGCUG-GCUCGGCaagcacgugcaGGcGAUCGc -3'
miRNA:   3'- -GAGCGC-CGGCuUGAGCCG-----------CC-CUAGCu -5'
18753 3' -59.6 NC_004683.1 + 33278 0.66 0.515371
Target:  5'- uUCGCGGaCGGugcGCUgGGUGGGAUg-- -3'
miRNA:   3'- gAGCGCCgGCU---UGAgCCGCCCUAgcu -5'
18753 3' -59.6 NC_004683.1 + 4522 0.66 0.515371
Target:  5'- -gCGCGucGUCGGACUCGGcCGGGuguUCa- -3'
miRNA:   3'- gaGCGC--CGGCUUGAGCC-GCCCu--AGcu -5'
18753 3' -59.6 NC_004683.1 + 54236 0.66 0.511349
Target:  5'- -gCGCGGCCGuugaccuuuggccGCUCGGCGucGAuaUCGAu -3'
miRNA:   3'- gaGCGCCGGCu------------UGAGCCGCc-CU--AGCU- -5'
18753 3' -59.6 NC_004683.1 + 40479 0.66 0.50534
Target:  5'- -gCGCGGCagguCGAGCUCGuCGaGGUCGAg -3'
miRNA:   3'- gaGCGCCG----GCUUGAGCcGCcCUAGCU- -5'
18753 3' -59.6 NC_004683.1 + 29344 0.66 0.50534
Target:  5'- gUCGgGGUcuCGGAUUgGGCGGuGUCGAa -3'
miRNA:   3'- gAGCgCCG--GCUUGAgCCGCCcUAGCU- -5'
18753 3' -59.6 NC_004683.1 + 41281 0.66 0.494405
Target:  5'- cCUCgGCGGCCuucgccGCgUCGGCGGGuguccauAUCGGa -3'
miRNA:   3'- -GAG-CGCCGGcu----UG-AGCCGCCC-------UAGCU- -5'
18753 3' -59.6 NC_004683.1 + 3107 0.67 0.485538
Target:  5'- -cCGCGGCCGGG-UCGGCcaucGGGUUGu -3'
miRNA:   3'- gaGCGCCGGCUUgAGCCGc---CCUAGCu -5'
18753 3' -59.6 NC_004683.1 + 47377 0.67 0.475776
Target:  5'- aUCGCGGgCuGGCUCGGCaGcgugaGAUCGAa -3'
miRNA:   3'- gAGCGCCgGcUUGAGCCGcC-----CUAGCU- -5'
18753 3' -59.6 NC_004683.1 + 33350 0.67 0.456553
Target:  5'- gUCGCgGGCCucuuuCUCGGUGGGGUa-- -3'
miRNA:   3'- gAGCG-CCGGcuu--GAGCCGCCCUAgcu -5'
18753 3' -59.6 NC_004683.1 + 54050 0.67 0.456553
Target:  5'- -cCGCGG-UGAGCUUGGCGacGUCGAa -3'
miRNA:   3'- gaGCGCCgGCUUGAGCCGCccUAGCU- -5'
18753 3' -59.6 NC_004683.1 + 301 0.67 0.456553
Target:  5'- aUCGCGGC---GCUCGGaguGGGAUCc- -3'
miRNA:   3'- gAGCGCCGgcuUGAGCCg--CCCUAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.