miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18754 3' -62.3 NC_004683.1 + 6827 0.66 0.377289
Target:  5'- cGGCagcgaCAGCa-CGCGGCCGCCcgGGc -3'
miRNA:   3'- uCCGgg---GUUGgcGUGCCGGCGGuaCU- -5'
18754 3' -62.3 NC_004683.1 + 51713 0.66 0.377289
Target:  5'- cAGGCCCUgcagGAgUGCuACGGCCGCgAc-- -3'
miRNA:   3'- -UCCGGGG----UUgGCG-UGCCGGCGgUacu -5'
18754 3' -62.3 NC_004683.1 + 26447 0.66 0.377289
Target:  5'- uGGCCgCAgugcacACCGCGauccaGGCCGCCc--- -3'
miRNA:   3'- uCCGGgGU------UGGCGUg----CCGGCGGuacu -5'
18754 3' -62.3 NC_004683.1 + 39513 0.66 0.374757
Target:  5'- gAGGUCCUGGCCGCGagggcgaauguaagUGGUgGCgGUGGc -3'
miRNA:   3'- -UCCGGGGUUGGCGU--------------GCCGgCGgUACU- -5'
18754 3' -62.3 NC_004683.1 + 52957 0.66 0.368896
Target:  5'- uGGCCCagcGCUGCAgGGUuCGCCGcUGGa -3'
miRNA:   3'- uCCGGGgu-UGGCGUgCCG-GCGGU-ACU- -5'
18754 3' -62.3 NC_004683.1 + 24780 0.66 0.368896
Target:  5'- cGGUCgCGGCgGCGC-GCgGCCAUGGc -3'
miRNA:   3'- uCCGGgGUUGgCGUGcCGgCGGUACU- -5'
18754 3' -62.3 NC_004683.1 + 33306 0.66 0.368896
Target:  5'- cGGGCCgCCAACCGCGCaGaGuCCaCCGuUGAc -3'
miRNA:   3'- -UCCGG-GGUUGGCGUG-C-C-GGcGGU-ACU- -5'
18754 3' -62.3 NC_004683.1 + 7019 0.66 0.368896
Target:  5'- -cGCCC--GCCGCcaguCGGCCGCCucggucucaGUGAa -3'
miRNA:   3'- ucCGGGguUGGCGu---GCCGGCGG---------UACU- -5'
18754 3' -62.3 NC_004683.1 + 31526 0.66 0.368064
Target:  5'- uGGCCgUuuuggguGACCGC-C-GCCGCCGUGGg -3'
miRNA:   3'- uCCGGgG-------UUGGCGuGcCGGCGGUACU- -5'
18754 3' -62.3 NC_004683.1 + 44723 0.66 0.360633
Target:  5'- gGGGCgCUCAugCGUugGGcCCGUCGa-- -3'
miRNA:   3'- -UCCG-GGGUugGCGugCC-GGCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 10554 0.66 0.360633
Target:  5'- gGGGCCaguaaCGACCGCAUcGUCGCuCAggcUGAg -3'
miRNA:   3'- -UCCGGg----GUUGGCGUGcCGGCG-GU---ACU- -5'
18754 3' -62.3 NC_004683.1 + 51198 0.66 0.359813
Target:  5'- cGGCCCUucgcgccGGCCGCGCc-CCGCCAg-- -3'
miRNA:   3'- uCCGGGG-------UUGGCGUGccGGCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 5085 0.66 0.358995
Target:  5'- cGGGCUCCAGgauggcgUCGCggucguagucgccACGGCCGCCcUGc -3'
miRNA:   3'- -UCCGGGGUU-------GGCG-------------UGCCGGCGGuACu -5'
18754 3' -62.3 NC_004683.1 + 46668 0.66 0.352499
Target:  5'- cGGCCCuCGACCGgcaccagcaGCGGCaGCCAg-- -3'
miRNA:   3'- uCCGGG-GUUGGCg--------UGCCGgCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 21933 0.66 0.352499
Target:  5'- cGGCaauccgCCCGGCgGUggcggGCGGCCGCCGa-- -3'
miRNA:   3'- uCCG------GGGUUGgCG-----UGCCGGCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 12719 0.66 0.344496
Target:  5'- cGGGCCCagCAGCgGCGCcGCgGCCAg-- -3'
miRNA:   3'- -UCCGGG--GUUGgCGUGcCGgCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 24890 0.66 0.344496
Target:  5'- cGGCaUCGcCCGCAagaccCGGCCGCUGUGGc -3'
miRNA:   3'- uCCGgGGUuGGCGU-----GCCGGCGGUACU- -5'
18754 3' -62.3 NC_004683.1 + 46777 0.66 0.344496
Target:  5'- uGGCCCCAuucaucgcggaGuuGCGCGGCgGCgGg-- -3'
miRNA:   3'- uCCGGGGU-----------UggCGUGCCGgCGgUacu -5'
18754 3' -62.3 NC_004683.1 + 33834 0.66 0.344496
Target:  5'- -uGCUCUgcgAGCuCGCGCGGUCGCCggGAc -3'
miRNA:   3'- ucCGGGG---UUG-GCGUGCCGGCGGuaCU- -5'
18754 3' -62.3 NC_004683.1 + 51285 0.66 0.343703
Target:  5'- gAGGCaCUCAucgccgaGCUGgAgGGCCGCCgAUGAa -3'
miRNA:   3'- -UCCG-GGGU-------UGGCgUgCCGGCGG-UACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.