miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18756 5' -54.3 NC_004683.1 + 24655 0.66 0.778595
Target:  5'- -cCGAGuucgcGCGCCuGCUGC-GCACCAa -3'
miRNA:   3'- cuGCUCu----UGUGGuUGACGgCGUGGUc -5'
18756 5' -54.3 NC_004683.1 + 19855 0.66 0.778595
Target:  5'- -cCGAGAGCGaCGACaG-CGCACCAGu -3'
miRNA:   3'- cuGCUCUUGUgGUUGaCgGCGUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 13649 0.66 0.778595
Target:  5'- uGGCGAGcuuGAUGCCGAuCUGUgcggccugagaUGCACCGGg -3'
miRNA:   3'- -CUGCUC---UUGUGGUU-GACG-----------GCGUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 26430 0.66 0.768424
Target:  5'- cGCG-GAGgGCCAACgcgGCCucGCACCGc -3'
miRNA:   3'- cUGCuCUUgUGGUUGa--CGG--CGUGGUc -5'
18756 5' -54.3 NC_004683.1 + 43759 0.66 0.768424
Target:  5'- -uUGGGcacugcacGCGCCAGCUGCgGCACgAGc -3'
miRNA:   3'- cuGCUCu-------UGUGGUUGACGgCGUGgUC- -5'
18756 5' -54.3 NC_004683.1 + 18794 0.66 0.75811
Target:  5'- cGACGgcaAGGGCAUCGAuCUGCCGUucaucACCGc -3'
miRNA:   3'- -CUGC---UCUUGUGGUU-GACGGCG-----UGGUc -5'
18756 5' -54.3 NC_004683.1 + 41111 0.66 0.747665
Target:  5'- cGGCGAGGuagGCGCCGaggucACUGCCcugggguccGCAguCCAGa -3'
miRNA:   3'- -CUGCUCU---UGUGGU-----UGACGG---------CGU--GGUC- -5'
18756 5' -54.3 NC_004683.1 + 26708 0.66 0.747665
Target:  5'- -uCGAGuGCGCCGGCgGCaucgCGCACCGa -3'
miRNA:   3'- cuGCUCuUGUGGUUGaCG----GCGUGGUc -5'
18756 5' -54.3 NC_004683.1 + 1476 0.66 0.747665
Target:  5'- gGGCGuccucGAuCGCCGGCuUGUCGUGCCAGc -3'
miRNA:   3'- -CUGCu----CUuGUGGUUG-ACGGCGUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 28040 0.66 0.747665
Target:  5'- gGGCGAG-ACAUUGGC-GCCGC-CCGGc -3'
miRNA:   3'- -CUGCUCuUGUGGUUGaCGGCGuGGUC- -5'
18756 5' -54.3 NC_004683.1 + 53835 0.66 0.747665
Target:  5'- uGGCGAGccguGCAguCCAGCUGaUCGgGCCGGu -3'
miRNA:   3'- -CUGCUCu---UGU--GGUUGAC-GGCgUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 42046 0.66 0.747665
Target:  5'- cGGCGAGGGCaacaucggcgaACCGguggucacACUGCCGCcCuCAGa -3'
miRNA:   3'- -CUGCUCUUG-----------UGGU--------UGACGGCGuG-GUC- -5'
18756 5' -54.3 NC_004683.1 + 12721 0.66 0.737099
Target:  5'- aGCGGGcccAGCAgCGGC-GCCGCgGCCAGg -3'
miRNA:   3'- cUGCUC---UUGUgGUUGaCGGCG-UGGUC- -5'
18756 5' -54.3 NC_004683.1 + 34182 0.66 0.737099
Target:  5'- cGACcAGcACGCCGACaucgauguguccUGCCGCuACCGGc -3'
miRNA:   3'- -CUGcUCuUGUGGUUG------------ACGGCG-UGGUC- -5'
18756 5' -54.3 NC_004683.1 + 23191 0.67 0.715656
Target:  5'- -uCGAuGAGCGCCAcGCUGCCGCuggcgaacGCCc- -3'
miRNA:   3'- cuGCU-CUUGUGGU-UGACGGCG--------UGGuc -5'
18756 5' -54.3 NC_004683.1 + 27190 0.67 0.715656
Target:  5'- cGACGGcGuAGCGgCGaugACUGCCGCGCUGGc -3'
miRNA:   3'- -CUGCU-C-UUGUgGU---UGACGGCGUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 25955 0.67 0.715656
Target:  5'- cGGCGAacucGACGCCGA--GCCGCAgCCAGc -3'
miRNA:   3'- -CUGCUc---UUGUGGUUgaCGGCGU-GGUC- -5'
18756 5' -54.3 NC_004683.1 + 23158 0.67 0.715656
Target:  5'- cACGAGAgcGCGCCGG-UGa-GCACCAGg -3'
miRNA:   3'- cUGCUCU--UGUGGUUgACggCGUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 3081 0.67 0.715656
Target:  5'- uGCuuGAugACCAgguucACUGUCGCACCGu -3'
miRNA:   3'- cUGcuCUugUGGU-----UGACGGCGUGGUc -5'
18756 5' -54.3 NC_004683.1 + 42827 0.67 0.704802
Target:  5'- cGGCGGcAACAgCAGCU-UCGCGCCGGa -3'
miRNA:   3'- -CUGCUcUUGUgGUUGAcGGCGUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.