miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18757 3' -56.5 NC_004683.1 + 21530 0.66 0.69948
Target:  5'- uCCCGGUCuGGuGCCGCuacaucgacgugAUCCuGCugGGcgGCg -3'
miRNA:   3'- -GGGUUAG-CC-CGGCG------------UAGG-CGugCU--UG- -5'
18757 3' -56.5 NC_004683.1 + 51177 0.66 0.695221
Target:  5'- aUCCGG-CGcGCCGCcgagaacgcgccCCGCACGAGCg -3'
miRNA:   3'- -GGGUUaGCcCGGCGua----------GGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 40584 0.66 0.68239
Target:  5'- uCUCGAUgGcGGCUGUccuggcacuggcgguGUUCGCAUGAGCa -3'
miRNA:   3'- -GGGUUAgC-CCGGCG---------------UAGGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 12691 0.66 0.674874
Target:  5'- aUCCGAggCGGGCacgGCAUCCucggcauccucggcGCGCGGGg -3'
miRNA:   3'- -GGGUUa-GCCCGg--CGUAGG--------------CGUGCUUg -5'
18757 3' -56.5 NC_004683.1 + 6562 0.66 0.667339
Target:  5'- aCCCGGcUCGGcGCUgGCGUCCucgacgcugGCGCGAcgACg -3'
miRNA:   3'- -GGGUU-AGCC-CGG-CGUAGG---------CGUGCU--UG- -5'
18757 3' -56.5 NC_004683.1 + 26461 0.66 0.667339
Target:  5'- aCCgCGAUCcaGGCCGC--CCGC-CGAGCc -3'
miRNA:   3'- -GG-GUUAGc-CCGGCGuaGGCGuGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 2278 0.66 0.667339
Target:  5'- uCUCGAcgcgaGGcGCUGCAccCCGCAUGAGCa -3'
miRNA:   3'- -GGGUUag---CC-CGGCGUa-GGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 11498 0.66 0.656547
Target:  5'- gCUGAagGuGGCCcCA-CCGCACGAGCa -3'
miRNA:   3'- gGGUUagC-CCGGcGUaGGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 49915 0.66 0.656547
Target:  5'- aUCGAUCGGaCCGCAUgC-CACGAGg -3'
miRNA:   3'- gGGUUAGCCcGGCGUAgGcGUGCUUg -5'
18757 3' -56.5 NC_004683.1 + 22615 0.66 0.645734
Target:  5'- aCCAGuugauUCGGGgCGCAUgugCCaGCACGAc- -3'
miRNA:   3'- gGGUU-----AGCCCgGCGUA---GG-CGUGCUug -5'
18757 3' -56.5 NC_004683.1 + 32796 0.66 0.645734
Target:  5'- cUCCGAagucgCGGGCCaGC--CgGCGCGAGCu -3'
miRNA:   3'- -GGGUUa----GCCCGG-CGuaGgCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 36016 0.66 0.645734
Target:  5'- -aCGAUCGcGGCCcCuuGUCCGCuuGAACa -3'
miRNA:   3'- ggGUUAGC-CCGGcG--UAGGCGugCUUG- -5'
18757 3' -56.5 NC_004683.1 + 17861 0.66 0.645734
Target:  5'- aCCCAAccgggCGGGCCGgGgacgCCGCA-GcGCg -3'
miRNA:   3'- -GGGUUa----GCCCGGCgUa---GGCGUgCuUG- -5'
18757 3' -56.5 NC_004683.1 + 42590 0.66 0.645734
Target:  5'- -gCGGUCgGGGCCGguCGUCCGgCugGggUg -3'
miRNA:   3'- ggGUUAG-CCCGGC--GUAGGC-GugCuuG- -5'
18757 3' -56.5 NC_004683.1 + 35205 0.66 0.645734
Target:  5'- aUCCAAUCGGGacaagcaCGCAUCCauguCGGAa -3'
miRNA:   3'- -GGGUUAGCCCg------GCGUAGGcgu-GCUUg -5'
18757 3' -56.5 NC_004683.1 + 17323 0.66 0.645734
Target:  5'- cCCCGuaCGGcCCGUAUgCGUugGGGCg -3'
miRNA:   3'- -GGGUuaGCCcGGCGUAgGCGugCUUG- -5'
18757 3' -56.5 NC_004683.1 + 20298 0.66 0.641405
Target:  5'- aCCCGGcCgGGGCggcgacggcggcagCGCGUucaugucCCGCGCGAACa -3'
miRNA:   3'- -GGGUUaG-CCCG--------------GCGUA-------GGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 10876 0.67 0.634909
Target:  5'- uCCCGcugAUCcGaGCCGCAgaaGCGCGGACg -3'
miRNA:   3'- -GGGU---UAGcC-CGGCGUaggCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 44933 0.67 0.634909
Target:  5'- cUCCAGgcCGGGCCaccacgGCGaUUGCGCGAGCu -3'
miRNA:   3'- -GGGUUa-GCCCGG------CGUaGGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 24417 0.67 0.634909
Target:  5'- aCgAGUCGGcGuuGCAUCuCGCGggUGAACu -3'
miRNA:   3'- gGgUUAGCC-CggCGUAG-GCGU--GCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.