Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18757 | 3' | -56.5 | NC_004683.1 | + | 1183 | 0.7 | 0.419029 |
Target: 5'- aCCUcggAGUCGGcGUgGCAUCCG-ACGAGCc -3' miRNA: 3'- -GGG---UUAGCC-CGgCGUAGGCgUGCUUG- -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 2278 | 0.66 | 0.667339 |
Target: 5'- uCUCGAcgcgaGGcGCUGCAccCCGCAUGAGCa -3' miRNA: 3'- -GGGUUag---CC-CGGCGUa-GGCGUGCUUG- -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 2778 | 1.11 | 0.000587 |
Target: 5'- aCCCAAUCGGGCCGCAUCCGCACGAACu -3' miRNA: 3'- -GGGUUAGCCCGGCGUAGGCGUGCUUG- -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 3586 | 0.67 | 0.61326 |
Target: 5'- gCCCGG-CGuGuCCGCGUCgGCGuCGAGCg -3' miRNA: 3'- -GGGUUaGCcC-GGCGUAGgCGU-GCUUG- -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 4891 | 0.68 | 0.558502 |
Target: 5'- gCCGAaCuGGcCCGCGUCCGaucgacuCACGAGCa -3' miRNA: 3'- gGGUUaGcCC-GGCGUAGGC-------GUGCUUG- -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 6133 | 0.7 | 0.436896 |
Target: 5'- gCCCAA-CGGGUCGCGcggcUgguucgcguacuaCCGCAUGGGCg -3' miRNA: 3'- -GGGUUaGCCCGGCGU----A-------------GGCGUGCUUG- -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 6562 | 0.66 | 0.667339 |
Target: 5'- aCCCGGcUCGGcGCUgGCGUCCucgacgcugGCGCGAcgACg -3' miRNA: 3'- -GGGUU-AGCC-CGG-CGUAGG---------CGUGCU--UG- -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 8390 | 0.72 | 0.360566 |
Target: 5'- cCCCGcgCGGGCCGCgAUCCagcccaccaguaaauGC-CGGAUg -3' miRNA: 3'- -GGGUuaGCCCGGCG-UAGG---------------CGuGCUUG- -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 9269 | 0.67 | 0.591675 |
Target: 5'- aCCCucgCGGGgCGCAUgcCCGgGCuGGACg -3' miRNA: 3'- -GGGuuaGCCCgGCGUA--GGCgUG-CUUG- -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 10876 | 0.67 | 0.634909 |
Target: 5'- uCCCGcugAUCcGaGCCGCAgaaGCGCGGACg -3' miRNA: 3'- -GGGU---UAGcC-CGGCGUaggCGUGCUUG- -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 11498 | 0.66 | 0.656547 |
Target: 5'- gCUGAagGuGGCCcCA-CCGCACGAGCa -3' miRNA: 3'- gGGUUagC-CCGGcGUaGGCGUGCUUG- -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 12016 | 0.68 | 0.570222 |
Target: 5'- aUCGAcgCGGGCCagcGCGcCCGCGCGGGg -3' miRNA: 3'- gGGUUa-GCCCGG---CGUaGGCGUGCUUg -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 12048 | 0.71 | 0.36564 |
Target: 5'- cCCCGGUgUGGGCagcgGCGguagccCCGCGCGGGCg -3' miRNA: 3'- -GGGUUA-GCCCGg---CGUa-----GGCGUGCUUG- -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 12102 | 0.7 | 0.437848 |
Target: 5'- cCCCGcgCGGGCgCGCuggcCCGCGuCGAu- -3' miRNA: 3'- -GGGUuaGCCCG-GCGua--GGCGU-GCUug -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 12562 | 0.68 | 0.542633 |
Target: 5'- uUCCAGgugcccugcugcgccUCGGacaGCCGCAUCUGCGCuGAGa -3' miRNA: 3'- -GGGUU---------------AGCC---CGGCGUAGGCGUG-CUUg -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 12691 | 0.66 | 0.674874 |
Target: 5'- aUCCGAggCGGGCacgGCAUCCucggcauccucggcGCGCGGGg -3' miRNA: 3'- -GGGUUa-GCCCGg--CGUAGG--------------CGUGCUUg -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 14581 | 0.75 | 0.217529 |
Target: 5'- gCCGA-CGGGUCGCAggcCCGCugGAAa -3' miRNA: 3'- gGGUUaGCCCGGCGUa--GGCGugCUUg -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 14781 | 0.67 | 0.624081 |
Target: 5'- cCCCGAUgGcuccugggauGGCaacgGCAUCCGCAUGcGCa -3' miRNA: 3'- -GGGUUAgC----------CCGg---CGUAGGCGUGCuUG- -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 15240 | 0.71 | 0.400709 |
Target: 5'- uCCUGAUCGccgauGuuGCGgaUCCGCACGAACc -3' miRNA: 3'- -GGGUUAGCc----CggCGU--AGGCGUGCUUG- -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 15345 | 0.67 | 0.624081 |
Target: 5'- aCCUggUUGGGCaGCAgCgGCcCGAACu -3' miRNA: 3'- -GGGuuAGCCCGgCGUaGgCGuGCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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