miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18757 5' -51.7 NC_004683.1 + 24948 0.66 0.919635
Target:  5'- cCGGUCuuGUCCuuggACGGGUUGCCGa- -3'
miRNA:   3'- uGCUAG--CAGGuca-UGCUCAAUGGCcg -5'
18757 5' -51.7 NC_004683.1 + 40608 0.66 0.919635
Target:  5'- gGCGAUCGaguggcccgCCGaggggggcgccGUGCGGGgaauuCCGGCg -3'
miRNA:   3'- -UGCUAGCa--------GGU-----------CAUGCUCaau--GGCCG- -5'
18757 5' -51.7 NC_004683.1 + 39532 0.66 0.918403
Target:  5'- gGCGAcuaccuguaucgCGUCCGGguUACcAGUUACCcGGCu -3'
miRNA:   3'- -UGCUa-----------GCAGGUC--AUGcUCAAUGG-CCG- -5'
18757 5' -51.7 NC_004683.1 + 38293 0.66 0.913367
Target:  5'- aACGGagGUCCAGU-CaAGU--CCGGCa -3'
miRNA:   3'- -UGCUagCAGGUCAuGcUCAauGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 21833 0.66 0.912724
Target:  5'- cGCGGUCGUugaaccaCCGGUcugcccgcggGCuGGGUUGaauCCGGCg -3'
miRNA:   3'- -UGCUAGCA-------GGUCA----------UG-CUCAAU---GGCCG- -5'
18757 5' -51.7 NC_004683.1 + 48637 0.66 0.911431
Target:  5'- gACGAUCacCCAGUGCagcccgacguuuguGAcggUGCCGGCg -3'
miRNA:   3'- -UGCUAGcaGGUCAUG--------------CUca-AUGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 47283 0.66 0.906148
Target:  5'- uCGcgCGgCCGGUGgGGugaccgcGUUGCCGGCc -3'
miRNA:   3'- uGCuaGCaGGUCAUgCU-------CAAUGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 34053 0.66 0.899993
Target:  5'- cACGAgcUgGUCCAccGCGAGcggggaccggUGCCGGCc -3'
miRNA:   3'- -UGCU--AgCAGGUcaUGCUCa---------AUGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 25100 0.66 0.899993
Target:  5'- gGCGGUCuggCCAacccgGCGGcGUUGCCGGUc -3'
miRNA:   3'- -UGCUAGca-GGUca---UGCU-CAAUGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 46398 0.66 0.892893
Target:  5'- uACcg-CGcCCAGUACGuG-UACCGGUg -3'
miRNA:   3'- -UGcuaGCaGGUCAUGCuCaAUGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 11034 0.67 0.884771
Target:  5'- uGCGGUCccugcaguucgguGUCCAGU-CGGGgcucAUCGGCc -3'
miRNA:   3'- -UGCUAG-------------CAGGUCAuGCUCaa--UGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 8622 0.67 0.877888
Target:  5'- gGCGAUCaggCCGGUGCG-GUgGCCGcccuGCa -3'
miRNA:   3'- -UGCUAGca-GGUCAUGCuCAaUGGC----CG- -5'
18757 5' -51.7 NC_004683.1 + 7032 0.67 0.877888
Target:  5'- gACGAU-GUCgAGUACGAGUgguucgagACC-GCg -3'
miRNA:   3'- -UGCUAgCAGgUCAUGCUCAa-------UGGcCG- -5'
18757 5' -51.7 NC_004683.1 + 44102 0.67 0.869994
Target:  5'- cGCGAUCGUCgAGgug-----ACCGGCg -3'
miRNA:   3'- -UGCUAGCAGgUCaugcucaaUGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 41383 0.67 0.869994
Target:  5'- cACGAUCGaCgAGUACccGUcgGCUGGCg -3'
miRNA:   3'- -UGCUAGCaGgUCAUGcuCAa-UGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 24413 0.67 0.861848
Target:  5'- gGCGAUCGUCgGcuacgGCGGGaccaagccGCCGGCc -3'
miRNA:   3'- -UGCUAGCAGgUca---UGCUCaa------UGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 13598 0.67 0.861848
Target:  5'- cGCGAUCGgCUA-UGCGGGccagcucGCCGGCa -3'
miRNA:   3'- -UGCUAGCaGGUcAUGCUCaa-----UGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 4218 0.67 0.853458
Target:  5'- -aGAUCGggCCGGUgACGug--GCCGGCc -3'
miRNA:   3'- ugCUAGCa-GGUCA-UGCucaaUGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 46721 0.67 0.853458
Target:  5'- -gGGUCGUCaUGGUGCGGGU---CGGCu -3'
miRNA:   3'- ugCUAGCAG-GUCAUGCUCAaugGCCG- -5'
18757 5' -51.7 NC_004683.1 + 21698 0.68 0.808132
Target:  5'- -gGGUgGU-CGGUGCGGGUggcGCUGGCa -3'
miRNA:   3'- ugCUAgCAgGUCAUGCUCAa--UGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.