miRNA display CGI


Results 1 - 20 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18762 3' -59.6 NC_004683.1 + 3036 0.66 0.54032
Target:  5'- cCGAcCCGGCCGCgGUGAagaagUGGGCc -3'
miRNA:   3'- -GCUuGGUCGGCG-CGCUgggcaACCCG- -5'
18762 3' -59.6 NC_004683.1 + 52159 0.66 0.54032
Target:  5'- --cACgCAGCUGCGUGACaCGUUGcGCg -3'
miRNA:   3'- gcuUG-GUCGGCGCGCUGgGCAACcCG- -5'
18762 3' -59.6 NC_004683.1 + 56050 0.66 0.530083
Target:  5'- uGAGCgAGCCGUGUGG--UG-UGGGCg -3'
miRNA:   3'- gCUUGgUCGGCGCGCUggGCaACCCG- -5'
18762 3' -59.6 NC_004683.1 + 26291 0.66 0.530083
Target:  5'- ---uUCGGCgGCGUucucGACCUGgcGGGCg -3'
miRNA:   3'- gcuuGGUCGgCGCG----CUGGGCaaCCCG- -5'
18762 3' -59.6 NC_004683.1 + 35710 0.66 0.527025
Target:  5'- uGAAuCCAgguccucuucccuuGCCGCGCGucagcgucCuuGUUGGGUg -3'
miRNA:   3'- gCUU-GGU--------------CGGCGCGCu-------GggCAACCCG- -5'
18762 3' -59.6 NC_004683.1 + 52328 0.66 0.519917
Target:  5'- uGcGCCuugguGCCGCGcCGGCCCGggucgccGaGGCg -3'
miRNA:   3'- gCuUGGu----CGGCGC-GCUGGGCaa-----C-CCG- -5'
18762 3' -59.6 NC_004683.1 + 47300 0.66 0.519917
Target:  5'- aCGAcACCgacgaGGUcuCGCGCGGCCgGUgGGGUg -3'
miRNA:   3'- -GCU-UGG-----UCG--GCGCGCUGGgCAaCCCG- -5'
18762 3' -59.6 NC_004683.1 + 8471 0.66 0.519917
Target:  5'- uGGGCUGGau-CGCGGCCCGcgcgGGGCc -3'
miRNA:   3'- gCUUGGUCggcGCGCUGGGCaa--CCCG- -5'
18762 3' -59.6 NC_004683.1 + 24733 0.66 0.509829
Target:  5'- gCGcAgCAGgCGCGCGaACUCGgcggccUGGGCg -3'
miRNA:   3'- -GCuUgGUCgGCGCGC-UGGGCa-----ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 12867 0.66 0.509829
Target:  5'- --cGCCAGCgGCGUauCCCGccGGGUa -3'
miRNA:   3'- gcuUGGUCGgCGCGcuGGGCaaCCCG- -5'
18762 3' -59.6 NC_004683.1 + 1764 0.66 0.509829
Target:  5'- gCGcGCCGGCCGCGCuGCgaUCGUcGaGGCc -3'
miRNA:   3'- -GCuUGGUCGGCGCGcUG--GGCAaC-CCG- -5'
18762 3' -59.6 NC_004683.1 + 4635 0.66 0.499824
Target:  5'- uCGcACCGGCCuGCGUG-CCauCGgcaUGGGCa -3'
miRNA:   3'- -GCuUGGUCGG-CGCGCuGG--GCa--ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 4943 0.66 0.498828
Target:  5'- gCGGcgGCCAGCgGCGCaugcgcgucgaGGCCgGUUccucgcaGGGCg -3'
miRNA:   3'- -GCU--UGGUCGgCGCG-----------CUGGgCAA-------CCCG- -5'
18762 3' -59.6 NC_004683.1 + 9242 0.66 0.497834
Target:  5'- aCGcGCUGGCCgGCGaCGGCUCGUaagacccucgcgGGGCg -3'
miRNA:   3'- -GCuUGGUCGG-CGC-GCUGGGCAa-----------CCCG- -5'
18762 3' -59.6 NC_004683.1 + 11933 0.66 0.489907
Target:  5'- gCGGGCguugauucaGGCCaGCGCG-CCCGcgcgGGGCu -3'
miRNA:   3'- -GCUUGg--------UCGG-CGCGCuGGGCaa--CCCG- -5'
18762 3' -59.6 NC_004683.1 + 32786 0.66 0.489907
Target:  5'- gCGGGCCAGCCgGCGCGAgCUGccacuGCc -3'
miRNA:   3'- -GCUUGGUCGG-CGCGCUgGGCaacc-CG- -5'
18762 3' -59.6 NC_004683.1 + 39602 0.66 0.48892
Target:  5'- aGGACCu-CUGgGCG-CCCGUuccggggUGGGCg -3'
miRNA:   3'- gCUUGGucGGCgCGCuGGGCA-------ACCCG- -5'
18762 3' -59.6 NC_004683.1 + 21151 0.67 0.480083
Target:  5'- cCGAAcaucCCGGCCGCG-GACCaCGgugucGGCa -3'
miRNA:   3'- -GCUU----GGUCGGCGCgCUGG-GCaac--CCG- -5'
18762 3' -59.6 NC_004683.1 + 16849 0.67 0.480083
Target:  5'- cCGAACCGuacgcgaucGUCGuCGCG-CCCGagccGGGCg -3'
miRNA:   3'- -GCUUGGU---------CGGC-GCGCuGGGCaa--CCCG- -5'
18762 3' -59.6 NC_004683.1 + 24992 0.67 0.480083
Target:  5'- -uGAUCAGCCGCagcagccacaGCGGCCgGgucuugcGGGCg -3'
miRNA:   3'- gcUUGGUCGGCG----------CGCUGGgCaa-----CCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.