miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18763 3' -66.2 NC_004683.1 + 12105 0.66 0.262538
Target:  5'- uAGCcccGCGCGGgCGCgCuGGCCcgcGUCGAUa -3'
miRNA:   3'- -UCG---UGCGCCgGCGgGcCCGG---CAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 51623 0.66 0.262538
Target:  5'- cGCugGCGGCgCGCCU--GCCGUgcgUGAUg -3'
miRNA:   3'- uCGugCGCCG-GCGGGccCGGCA---GCUG- -5'
18763 3' -66.2 NC_004683.1 + 6957 0.66 0.262538
Target:  5'- cGCcguCGCGcGCCGUCCaGcGGCCGUagGGCu -3'
miRNA:   3'- uCGu--GCGC-CGGCGGG-C-CCGGCAg-CUG- -5'
18763 3' -66.2 NC_004683.1 + 24252 0.66 0.262538
Target:  5'- aGGCGCGCGGUCaugaCGcGGCCuugugcagGUCGGCg -3'
miRNA:   3'- -UCGUGCGCCGGcgg-GC-CCGG--------CAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 4882 0.66 0.262537
Target:  5'- gAGCGCGCcGCCgaacugGCCCGcGuCCGaUCGACu -3'
miRNA:   3'- -UCGUGCGcCGG------CGGGCcC-GGC-AGCUG- -5'
18763 3' -66.2 NC_004683.1 + 53579 0.66 0.262537
Target:  5'- cGGCagACGcCGGCCGCaCCGccGGCCG-CGuCu -3'
miRNA:   3'- -UCG--UGC-GCCGGCG-GGC--CCGGCaGCuG- -5'
18763 3' -66.2 NC_004683.1 + 3551 0.66 0.261914
Target:  5'- aAGCACaccggccugaccaGCGuucaacucuuGCCGCCCGGcGUguccgCGUCGGCg -3'
miRNA:   3'- -UCGUG-------------CGC----------CGGCGGGCC-CG-----GCAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 6855 0.66 0.260672
Target:  5'- gGGCACGCuuaccaagcccuacGGCCGCUgGacGGCgCG-CGACg -3'
miRNA:   3'- -UCGUGCG--------------CCGGCGGgC--CCG-GCaGCUG- -5'
18763 3' -66.2 NC_004683.1 + 24771 0.66 0.256359
Target:  5'- cGGCGCGCGGCCaugGCCuCGaugaCGUCGGg -3'
miRNA:   3'- -UCGUGCGCCGG---CGG-GCccg-GCAGCUg -5'
18763 3' -66.2 NC_004683.1 + 48542 0.66 0.256359
Target:  5'- cGGCAcCGUcacaaacgucgGGCUGCaCUGGGUgauCGUCGGCg -3'
miRNA:   3'- -UCGU-GCG-----------CCGGCG-GGCCCG---GCAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 51638 0.66 0.256359
Target:  5'- gAGCcCGCGGUCGCgcugCCGGGguUCGUUGGu -3'
miRNA:   3'- -UCGuGCGCCGGCG----GGCCC--GGCAGCUg -5'
18763 3' -66.2 NC_004683.1 + 44448 0.66 0.256359
Target:  5'- cAGCGCGCcaCCGCgCCGGcGCC--CGACg -3'
miRNA:   3'- -UCGUGCGccGGCG-GGCC-CGGcaGCUG- -5'
18763 3' -66.2 NC_004683.1 + 12707 0.66 0.248506
Target:  5'- cGGCGcCGCGGCCagGCUggcgacgaaucgcaCGaGGuuGUCGGCg -3'
miRNA:   3'- -UCGU-GCGCCGG--CGG--------------GC-CCggCAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 8470 0.66 0.24436
Target:  5'- gGGCuggauCGCGGcCCGCgCgGGGCCGaUCa-- -3'
miRNA:   3'- -UCGu----GCGCC-GGCG-GgCCCGGC-AGcug -5'
18763 3' -66.2 NC_004683.1 + 428 0.66 0.24436
Target:  5'- cGCAgGCGGUgGCUggCGcGGCgGUCGAg -3'
miRNA:   3'- uCGUgCGCCGgCGG--GC-CCGgCAGCUg -5'
18763 3' -66.2 NC_004683.1 + 22187 0.66 0.24436
Target:  5'- cAGUACG-GGuuGCgCGGGgCGggCGACg -3'
miRNA:   3'- -UCGUGCgCCggCGgGCCCgGCa-GCUG- -5'
18763 3' -66.2 NC_004683.1 + 47020 0.66 0.243773
Target:  5'- cAGCAgCGCGuGCCGCUccaccguCGuGCaCGUCGGCa -3'
miRNA:   3'- -UCGU-GCGC-CGGCGG-------GCcCG-GCAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 247 0.66 0.232832
Target:  5'- ----gGCGGCUGCUgGGG-UGUCGACg -3'
miRNA:   3'- ucgugCGCCGGCGGgCCCgGCAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 1273 0.66 0.232832
Target:  5'- aAGCGCGaguacaucaucaUGGCCaaCCCGcaGGCCgGUCGACg -3'
miRNA:   3'- -UCGUGC------------GCCGGc-GGGC--CCGG-CAGCUG- -5'
18763 3' -66.2 NC_004683.1 + 44651 0.66 0.232832
Target:  5'- cGCGCGUGGCuuugaCGCC--GGCCGaaUCGGCg -3'
miRNA:   3'- uCGUGCGCCG-----GCGGgcCCGGC--AGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.