miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18764 3' -66 NC_004683.1 + 24643 0.66 0.28861
Target:  5'- gCGCCCagGCCGCCgAGUUcGCgCGCCUg-- -3'
miRNA:   3'- -GCGGG--CGGCGG-UCAGcCG-GCGGAgcc -5'
18764 3' -66 NC_004683.1 + 54978 0.66 0.28861
Target:  5'- aCGCacaCCGCagCGUCAucgagcgcGUCGGCgGCCUCGa -3'
miRNA:   3'- -GCG---GGCG--GCGGU--------CAGCCGgCGGAGCc -5'
18764 3' -66 NC_004683.1 + 13353 0.66 0.28861
Target:  5'- aGCCUGCCcCCAGUCuccGGUgGCggCGGc -3'
miRNA:   3'- gCGGGCGGcGGUCAG---CCGgCGgaGCC- -5'
18764 3' -66 NC_004683.1 + 3344 0.66 0.287944
Target:  5'- uGCCCGUaguuugaguagguCGCCg--CGGCCaggcCCUCGGa -3'
miRNA:   3'- gCGGGCG-------------GCGGucaGCCGGc---GGAGCC- -5'
18764 3' -66 NC_004683.1 + 40927 0.66 0.282007
Target:  5'- uCGCCCGCgaUGCaCAcUCGGCacuucgauggCGCCUCGu -3'
miRNA:   3'- -GCGGGCG--GCG-GUcAGCCG----------GCGGAGCc -5'
18764 3' -66 NC_004683.1 + 839 0.66 0.282007
Target:  5'- uCGUgCGCCGaCCAGgaaaUGaGCCGCUgcUCGGu -3'
miRNA:   3'- -GCGgGCGGC-GGUCa---GC-CGGCGG--AGCC- -5'
18764 3' -66 NC_004683.1 + 3851 0.66 0.275525
Target:  5'- cCGCgagUCGCCGCCcaaGGUgcaguucgaccaCGGCCGCCaccccaugaUCGGc -3'
miRNA:   3'- -GCG---GGCGGCGG---UCA------------GCCGGCGG---------AGCC- -5'
18764 3' -66 NC_004683.1 + 10027 0.66 0.275525
Target:  5'- aGcCCCGCuCGUCA--CGGUCGCCgCGGu -3'
miRNA:   3'- gC-GGGCG-GCGGUcaGCCGGCGGaGCC- -5'
18764 3' -66 NC_004683.1 + 5833 0.66 0.275525
Target:  5'- aGCUCGCCGCgCGGcaccGCCGCCaaGGc -3'
miRNA:   3'- gCGGGCGGCG-GUCagc-CGGCGGagCC- -5'
18764 3' -66 NC_004683.1 + 41100 0.66 0.269162
Target:  5'- cCGCgCCGCUGCCA--CGGCCgggGCCUUu- -3'
miRNA:   3'- -GCG-GGCGGCGGUcaGCCGG---CGGAGcc -5'
18764 3' -66 NC_004683.1 + 25529 0.66 0.269162
Target:  5'- aCGCCgUGCCGCUguggcucggccuGGUC-GCCGCCcUGGc -3'
miRNA:   3'- -GCGG-GCGGCGG------------UCAGcCGGCGGaGCC- -5'
18764 3' -66 NC_004683.1 + 14240 0.66 0.269162
Target:  5'- aGCaCUGCCGCaAGcUGuGCCGCCUCa- -3'
miRNA:   3'- gCG-GGCGGCGgUCaGC-CGGCGGAGcc -5'
18764 3' -66 NC_004683.1 + 8254 0.66 0.269162
Target:  5'- uGCCC-CUGCUuGgccgCGGCCuucgcgGCCUCGGc -3'
miRNA:   3'- gCGGGcGGCGGuCa---GCCGG------CGGAGCC- -5'
18764 3' -66 NC_004683.1 + 29562 0.66 0.269162
Target:  5'- gGUCCGacgguauuuCCGcCCGGUCGGCaaucaauuccggCGCCUCaGGa -3'
miRNA:   3'- gCGGGC---------GGC-GGUCAGCCG------------GCGGAG-CC- -5'
18764 3' -66 NC_004683.1 + 47105 0.66 0.269162
Target:  5'- gGCCCGuuGgCCAucaucGUgCGcGCCGgCUCGGu -3'
miRNA:   3'- gCGGGCggC-GGU-----CA-GC-CGGCgGAGCC- -5'
18764 3' -66 NC_004683.1 + 3751 0.66 0.269162
Target:  5'- gGCCUGCCGCacacucucCAG-CGGCgGCCg-GGc -3'
miRNA:   3'- gCGGGCGGCG--------GUCaGCCGgCGGagCC- -5'
18764 3' -66 NC_004683.1 + 12880 0.66 0.262919
Target:  5'- uCGCCCGgguauCCGCCAG-CGGCguauccCGCCg-GGu -3'
miRNA:   3'- -GCGGGC-----GGCGGUCaGCCG------GCGGagCC- -5'
18764 3' -66 NC_004683.1 + 23163 0.66 0.262919
Target:  5'- aCGCCCacgagaGCgCGCCGGUgagcaccaGGCCGCCgagcaGGc -3'
miRNA:   3'- -GCGGG------CG-GCGGUCAg-------CCGGCGGag---CC- -5'
18764 3' -66 NC_004683.1 + 32512 0.66 0.262919
Target:  5'- aGCCggaCGUgGCgCAGacCGGCCGCCUUGa -3'
miRNA:   3'- gCGG---GCGgCG-GUCa-GCCGGCGGAGCc -5'
18764 3' -66 NC_004683.1 + 53637 0.66 0.262919
Target:  5'- gGCCCGCCGCgAccUGGCCGCg---- -3'
miRNA:   3'- gCGGGCGGCGgUcaGCCGGCGgagcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.