miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18767 5' -56.6 NC_004683.1 + 32049 0.67 0.540347
Target:  5'- gGUACCccgauccuGACGG-GGCCCcgACGCAGCgCu -3'
miRNA:   3'- -UAUGGu-------CUGUCaCUGGG--UGCGUCGgG- -5'
18767 5' -56.6 NC_004683.1 + 46936 0.67 0.551055
Target:  5'- -cACCAGGCcguGGUGuguGCCCgACGCGGUgaCCg -3'
miRNA:   3'- uaUGGUCUG---UCAC---UGGG-UGCGUCG--GG- -5'
18767 5' -56.6 NC_004683.1 + 5197 0.66 0.61637
Target:  5'- -gGCC-GACAGc-GCCCgggcACGCAGCUCg -3'
miRNA:   3'- uaUGGuCUGUCacUGGG----UGCGUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 47277 0.66 0.64933
Target:  5'- -gGCCGGugGgGUGA-CCGCGUugccGGCCUg -3'
miRNA:   3'- uaUGGUCugU-CACUgGGUGCG----UCGGG- -5'
18767 5' -56.6 NC_004683.1 + 4741 0.67 0.551055
Target:  5'- -gGCCAGAUc--GGgCCACGCuuGCCCa -3'
miRNA:   3'- uaUGGUCUGucaCUgGGUGCGu-CGGG- -5'
18767 5' -56.6 NC_004683.1 + 20526 0.66 0.594449
Target:  5'- -cGCCGGccaucggcGCGGUGGCCCcUGCAccGCCg -3'
miRNA:   3'- uaUGGUC--------UGUCACUGGGuGCGU--CGGg -5'
18767 5' -56.6 NC_004683.1 + 56257 0.66 0.638346
Target:  5'- gAUGCgGGugggcGCGGUGGCCaGCGCGGCg- -3'
miRNA:   3'- -UAUGgUC-----UGUCACUGGgUGCGUCGgg -5'
18767 5' -56.6 NC_004683.1 + 5918 0.68 0.52971
Target:  5'- -cGCCuuGGCGGcgGugCCGCGCGGCg- -3'
miRNA:   3'- uaUGGu-CUGUCa-CugGGUGCGUCGgg -5'
18767 5' -56.6 NC_004683.1 + 50458 0.67 0.561827
Target:  5'- gGUGCCAGccacagucgggGCAGcGGCCCAuCGCgaucAGCUCg -3'
miRNA:   3'- -UAUGGUC-----------UGUCaCUGGGU-GCG----UCGGG- -5'
18767 5' -56.6 NC_004683.1 + 21755 0.67 0.551055
Target:  5'- --cCCGGugA-UGAUgCGCGCAGUCCa -3'
miRNA:   3'- uauGGUCugUcACUGgGUGCGUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 11800 0.67 0.551055
Target:  5'- -gAUCGGACGGUucCUCACGCAggGCCUu -3'
miRNA:   3'- uaUGGUCUGUCAcuGGGUGCGU--CGGG- -5'
18767 5' -56.6 NC_004683.1 + 426 0.75 0.204165
Target:  5'- -gGCgCAGGCGGUGGCUgGCGCGGCg- -3'
miRNA:   3'- uaUG-GUCUGUCACUGGgUGCGUCGgg -5'
18767 5' -56.6 NC_004683.1 + 48986 0.66 0.627356
Target:  5'- aGUACCgcGGGCccgccGcGAUCCACGCcGCCCu -3'
miRNA:   3'- -UAUGG--UCUGu----CaCUGGGUGCGuCGGG- -5'
18767 5' -56.6 NC_004683.1 + 52698 0.66 0.627356
Target:  5'- aGUGCCGGguACAGcUGuacGCCaagCGCGguGCCCg -3'
miRNA:   3'- -UAUGGUC--UGUC-AC---UGG---GUGCguCGGG- -5'
18767 5' -56.6 NC_004683.1 + 26531 0.72 0.3081
Target:  5'- cUACCGGGCGGUGuuccuggcgaucACCCugGCugguugcgccGCCCu -3'
miRNA:   3'- uAUGGUCUGUCAC------------UGGGugCGu---------CGGG- -5'
18767 5' -56.6 NC_004683.1 + 32697 0.66 0.638346
Target:  5'- --gUCuGGCAGUGgcaGCUCGCGCcggcuGGCCCg -3'
miRNA:   3'- uauGGuCUGUCAC---UGGGUGCG-----UCGGG- -5'
18767 5' -56.6 NC_004683.1 + 41019 0.66 0.64933
Target:  5'- -gACCccaaGGGCAGUGACCUcgGCGCcuaccucGCCg -3'
miRNA:   3'- uaUGG----UCUGUCACUGGG--UGCGu------CGGg -5'
18767 5' -56.6 NC_004683.1 + 49581 0.67 0.572655
Target:  5'- -cACCAGuaGCAGUGGCCgCAuccuCGuCGGCCa -3'
miRNA:   3'- uaUGGUC--UGUCACUGG-GU----GC-GUCGGg -5'
18767 5' -56.6 NC_004683.1 + 13794 0.67 0.551055
Target:  5'- --cCCAGuCAGccgGGCCaGCaGCAGCCCg -3'
miRNA:   3'- uauGGUCuGUCa--CUGGgUG-CGUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 40319 0.67 0.540347
Target:  5'- -cGCCGcGGCGGUGACCCGaugaGCGaguaucucgacGCCUc -3'
miRNA:   3'- uaUGGU-CUGUCACUGGGUg---CGU-----------CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.