Results 1 - 20 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18770 | 3' | -52.8 | NC_004683.1 | + | 12242 | 1.11 | 0.001408 |
Target: 5'- cUGCGACGGAUCAAACGACGGCUUGGCc -3' miRNA: 3'- -ACGCUGCCUAGUUUGCUGCCGAACCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 16753 | 0.68 | 0.749428 |
Target: 5'- cUGCGAgCGGuccuugacgGUCAccacguACGuCGGCUUGGUc -3' miRNA: 3'- -ACGCU-GCC---------UAGUu-----UGCuGCCGAACCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 45023 | 0.68 | 0.770129 |
Target: 5'- cGUGAgcCGGGUUu--CGACGGCa-GGCg -3' miRNA: 3'- aCGCU--GCCUAGuuuGCUGCCGaaCCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 24062 | 0.66 | 0.873645 |
Target: 5'- gGCGugGuGAUCGcgccgaggggcacguAGCcgugcucGACGaGCUUGGCc -3' miRNA: 3'- aCGCugC-CUAGU---------------UUG-------CUGC-CGAACCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 41837 | 0.73 | 0.488361 |
Target: 5'- gGCGGCGGuAUCGAcgcGCGGguaggucauCGGCUcgGGCa -3' miRNA: 3'- aCGCUGCC-UAGUU---UGCU---------GCCGAa-CCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 56099 | 0.72 | 0.530571 |
Target: 5'- cGuCGACGGAgaCGAagucgGCGGCGGUgguggUGGCg -3' miRNA: 3'- aC-GCUGCCUa-GUU-----UGCUGCCGa----ACCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 25461 | 0.71 | 0.552175 |
Target: 5'- gGCGAUGGAUC-AGCGcCGGaaugcGGCg -3' miRNA: 3'- aCGCUGCCUAGuUUGCuGCCgaa--CCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 23249 | 0.7 | 0.618275 |
Target: 5'- gGUGGCgGGGUCGGugGAuCGGUggGGUc -3' miRNA: 3'- aCGCUG-CCUAGUUugCU-GCCGaaCCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 19461 | 0.7 | 0.662704 |
Target: 5'- cGCGACGuGAgu-GACGuCGGCg-GGCa -3' miRNA: 3'- aCGCUGC-CUaguUUGCuGCCGaaCCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 40220 | 0.68 | 0.749428 |
Target: 5'- cGCGGUGGAUCGcaugcagauuGGCGAUGGUcgcGGCc -3' miRNA: 3'- aCGCUGCCUAGU----------UUGCUGCCGaa-CCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 54316 | 0.68 | 0.728241 |
Target: 5'- gGUGGCauggGGAUCAcGCGGCGcccuucccguGCUUGGUc -3' miRNA: 3'- aCGCUG----CCUAGUuUGCUGC----------CGAACCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 56397 | 0.7 | 0.64495 |
Target: 5'- gUGUGcAUGGcgUAGGCGACGGCgugcagugugcggGGCg -3' miRNA: 3'- -ACGC-UGCCuaGUUUGCUGCCGaa-----------CCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 50918 | 0.77 | 0.291563 |
Target: 5'- cGCGACGG-UCucGCGACGGCUc-GCg -3' miRNA: 3'- aCGCUGCCuAGuuUGCUGCCGAacCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 41025 | 0.68 | 0.73889 |
Target: 5'- gGcCGACGGG-C-AACGGCGGCgcGGUc -3' miRNA: 3'- aC-GCUGCCUaGuUUGCUGCCGaaCCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 24519 | 0.75 | 0.39065 |
Target: 5'- uUGCGGCGc-UCGGuggcCGGCGGCUUGGUc -3' miRNA: 3'- -ACGCUGCcuAGUUu---GCUGCCGAACCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 21072 | 0.7 | 0.618275 |
Target: 5'- cGgGACGG-UC-GGCGACGGUgaccagGGCa -3' miRNA: 3'- aCgCUGCCuAGuUUGCUGCCGaa----CCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 44490 | 0.68 | 0.746279 |
Target: 5'- cGCGACGacuUCGGugGcguaucgaccucguGCGGCUcGGCg -3' miRNA: 3'- aCGCUGCcu-AGUUugC--------------UGCCGAaCCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 9576 | 0.68 | 0.749428 |
Target: 5'- -cCGGCGGcAUCAAcUGugGGUUcGGCa -3' miRNA: 3'- acGCUGCC-UAGUUuGCugCCGAaCCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 54063 | 0.74 | 0.41863 |
Target: 5'- cGCGACGGcgCcuccGCGGUGaGCUUGGCg -3' miRNA: 3'- aCGCUGCCuaGuu--UGCUGC-CGAACCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 3976 | 0.72 | 0.541337 |
Target: 5'- gGCGAUcgGGAUCGAGCcgaucaugggguGGCGGCcgUGGUc -3' miRNA: 3'- aCGCUG--CCUAGUUUG------------CUGCCGa-ACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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