miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18773 5' -65.2 NC_004683.1 + 7443 0.66 0.293846
Target:  5'- gGCCGAucaUGCCgaaauaugaCCUCgaCGGGCAGgUGCa -3'
miRNA:   3'- gCGGCU---ACGG---------GGAG--GCCCGUCgGCGg -5'
18773 5' -65.2 NC_004683.1 + 12112 0.66 0.293846
Target:  5'- cCGgCGGUaGCCCCgCgCGGGCGcGCUgGCCc -3'
miRNA:   3'- -GCgGCUA-CGGGGaG-GCCCGU-CGG-CGG- -5'
18773 5' -65.2 NC_004683.1 + 37163 0.66 0.293846
Target:  5'- cCGCCGA-GCaUCgaugacCUGGGCAucGCCGCCc -3'
miRNA:   3'- -GCGGCUaCGgGGa-----GGCCCGU--CGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 13723 0.66 0.293162
Target:  5'- uCGCCGGUGCgcggccugcgcugCCaaacaccgCCGGGCAacaggccCCGCCg -3'
miRNA:   3'- -GCGGCUACG-------------GGga------GGCCCGUc------GGCGG- -5'
18773 5' -65.2 NC_004683.1 + 20620 0.66 0.287057
Target:  5'- cCGCCGuUGCCg--CCGGu--GCCGCCg -3'
miRNA:   3'- -GCGGCuACGGggaGGCCcguCGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 18347 0.66 0.287057
Target:  5'- gCGCUG-UGUCUgcacgCCGGGCA-CCGCCu -3'
miRNA:   3'- -GCGGCuACGGGga---GGCCCGUcGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 6662 0.66 0.287057
Target:  5'- aCGCCG-UGCUgg-CCGcGGCGcGCCGCUg -3'
miRNA:   3'- -GCGGCuACGGggaGGC-CCGU-CGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 42669 0.66 0.280391
Target:  5'- aGCCGGacgaccgGCCCCgaccgCCGcGGCGcGCUcgGCCu -3'
miRNA:   3'- gCGGCUa------CGGGGa----GGC-CCGU-CGG--CGG- -5'
18773 5' -65.2 NC_004683.1 + 44378 0.66 0.273849
Target:  5'- gGUCGGUGCCCgggcgaucgUCGGcGCGGaUCGCCg -3'
miRNA:   3'- gCGGCUACGGGga-------GGCC-CGUC-GGCGG- -5'
18773 5' -65.2 NC_004683.1 + 7957 0.66 0.273849
Target:  5'- uGCgCGAUGCCCUgcgccuuggUCGGGguGUCGgguCCg -3'
miRNA:   3'- gCG-GCUACGGGGa--------GGCCCguCGGC---GG- -5'
18773 5' -65.2 NC_004683.1 + 41189 0.66 0.273849
Target:  5'- gGgUGAaaagGCCCCggCCGuGGCAGCgGCg -3'
miRNA:   3'- gCgGCUa---CGGGGa-GGC-CCGUCGgCGg -5'
18773 5' -65.2 NC_004683.1 + 6735 0.66 0.273849
Target:  5'- aGUCGAcgGCCC----GGGCGGCCGCg -3'
miRNA:   3'- gCGGCUa-CGGGgaggCCCGUCGGCGg -5'
18773 5' -65.2 NC_004683.1 + 25411 0.66 0.273202
Target:  5'- uGCCGGUGCgCCCaccgaacucuggUuuGGGCAGgugguacUCGCUg -3'
miRNA:   3'- gCGGCUACG-GGG------------AggCCCGUC-------GGCGG- -5'
18773 5' -65.2 NC_004683.1 + 49315 0.66 0.267431
Target:  5'- gGCUGAccGCCCCgacugcgcgCUGuGCGGCUGCCc -3'
miRNA:   3'- gCGGCUa-CGGGGa--------GGCcCGUCGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 10841 0.66 0.266795
Target:  5'- gGCCGGUGUggccaCCCUCggagugaUGGGUGGCCgauugcucGCCa -3'
miRNA:   3'- gCGGCUACG-----GGGAG-------GCCCGUCGG--------CGG- -5'
18773 5' -65.2 NC_004683.1 + 32542 0.66 0.261134
Target:  5'- aCGCUGAUGCaUCUCCgcGGGguGCCcacaGCUc -3'
miRNA:   3'- -GCGGCUACGgGGAGG--CCCguCGG----CGG- -5'
18773 5' -65.2 NC_004683.1 + 13031 0.66 0.261134
Target:  5'- uGUCGAcagagaccgGCCaCCggUgGGGCGGCCGUCg -3'
miRNA:   3'- gCGGCUa--------CGG-GGa-GgCCCGUCGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 50350 0.66 0.261134
Target:  5'- gCGCUGAUGUUCCgcacccugaUGGGCugAGaCCGCCu -3'
miRNA:   3'- -GCGGCUACGGGGag-------GCCCG--UC-GGCGG- -5'
18773 5' -65.2 NC_004683.1 + 11972 0.66 0.261134
Target:  5'- cCGCCc-UGCCCacaCCgGGGCuGUCGCCc -3'
miRNA:   3'- -GCGGcuACGGGga-GG-CCCGuCGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 25885 0.66 0.260511
Target:  5'- gCGUCGA-GUUCg-CCGGGCagacgcuGGCCGCCu -3'
miRNA:   3'- -GCGGCUaCGGGgaGGCCCG-------UCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.