miRNA display CGI


Results 1 - 20 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18775 5' -56.1 NC_004683.1 + 56243 0.66 0.729457
Target:  5'- aCCCgaCAUCGAGAACGCgCUacaGCGCg -3'
miRNA:   3'- aGGGa-GUGGCUCUUGUG-GAgc-UGCGg -5'
18775 5' -56.1 NC_004683.1 + 56193 0.66 0.687327
Target:  5'- aCCCgCAUCGucAGCuucuACCUCGGcCGCCa -3'
miRNA:   3'- aGGGaGUGGCucUUG----UGGAGCU-GCGG- -5'
18775 5' -56.1 NC_004683.1 + 55629 0.68 0.558531
Target:  5'- uUCCCaUgGCgCGuuGAGCAUUUCGACGUCg -3'
miRNA:   3'- -AGGG-AgUG-GCu-CUUGUGGAGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 55166 0.71 0.400337
Target:  5'- gUCCC-CACCGaAGAACGCaaagcCGuCGCCg -3'
miRNA:   3'- -AGGGaGUGGC-UCUUGUGga---GCuGCGG- -5'
18775 5' -56.1 NC_004683.1 + 54128 0.68 0.569146
Target:  5'- aCCCUguUUGAGAuCGauaUCGACGCCg -3'
miRNA:   3'- aGGGAguGGCUCUuGUgg-AGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 54035 0.66 0.687327
Target:  5'- aUCCgCGCCGAcGAACucgcccagcuccGCUcCGACGCCa -3'
miRNA:   3'- aGGGaGUGGCU-CUUG------------UGGaGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 52862 0.71 0.437322
Target:  5'- -gCCUCGgCGAGcAGCGCCucuugcagugucUCGACGUCg -3'
miRNA:   3'- agGGAGUgGCUC-UUGUGG------------AGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 52245 0.69 0.54692
Target:  5'- aCCCggGCCGGcgcGGCACCaaggcgcacgagcUCGACGCCu -3'
miRNA:   3'- aGGGagUGGCUc--UUGUGG-------------AGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 52033 0.69 0.547973
Target:  5'- uUCCCgCGCCGAGGcugggaACcguGCC-CGACGCg -3'
miRNA:   3'- -AGGGaGUGGCUCU------UG---UGGaGCUGCGg -5'
18775 5' -56.1 NC_004683.1 + 51755 0.8 0.114405
Target:  5'- gCCCUCGCCGAG--UACUUCGcCGCCa -3'
miRNA:   3'- aGGGAGUGGCUCuuGUGGAGCuGCGG- -5'
18775 5' -56.1 NC_004683.1 + 51331 0.71 0.441128
Target:  5'- cUCCCa-GCCGAGGGCcuucugcgacggcuuGCCgagcccguUCGACGCCa -3'
miRNA:   3'- -AGGGagUGGCUCUUG---------------UGG--------AGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 51079 0.76 0.223489
Target:  5'- gCCCUCGggcagaCGAGAcC-CCUCGGCGCCu -3'
miRNA:   3'- aGGGAGUg-----GCUCUuGuGGAGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 50335 0.66 0.719038
Target:  5'- aCCCUgauggGCUGAGAcCGCCucgUCGAUGUCg -3'
miRNA:   3'- aGGGAg----UGGCUCUuGUGG---AGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 49327 0.67 0.622802
Target:  5'- gUCCacaaGCCGAGGGCGCCcCgGACGUg -3'
miRNA:   3'- -AGGgag-UGGCUCUUGUGGaG-CUGCGg -5'
18775 5' -56.1 NC_004683.1 + 48959 0.72 0.391407
Target:  5'- gCCCUCACCGGGu-CACCUCcGgGUa -3'
miRNA:   3'- aGGGAGUGGCUCuuGUGGAGcUgCGg -5'
18775 5' -56.1 NC_004683.1 + 47647 0.7 0.476194
Target:  5'- gCCgUCGCaGGGGACGCCccauUCGGCGaCCa -3'
miRNA:   3'- aGGgAGUGgCUCUUGUGG----AGCUGC-GG- -5'
18775 5' -56.1 NC_004683.1 + 47429 0.67 0.643301
Target:  5'- gCCCUugucgcggcCACCGAccgcgguGAACACCaCGGCGaCCu -3'
miRNA:   3'- aGGGA---------GUGGCU-------CUUGUGGaGCUGC-GG- -5'
18775 5' -56.1 NC_004683.1 + 47183 0.7 0.466311
Target:  5'- aUCUCUCGCgGcuccagcaugcGGAACAggacauCCUCGACGUCg -3'
miRNA:   3'- -AGGGAGUGgC-----------UCUUGU------GGAGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 45833 0.66 0.723216
Target:  5'- -aCCUgGCCGucGAGacgcacaacacgaauCACCcCGACGCCg -3'
miRNA:   3'- agGGAgUGGCu-CUU---------------GUGGaGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 45659 0.66 0.687327
Target:  5'- -aCCagGCCGucaacGAGCGCCUUGACcguggGCCa -3'
miRNA:   3'- agGGagUGGCu----CUUGUGGAGCUG-----CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.