miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18777 5' -64.3 NC_004683.1 + 40212 0.65 0.358556
Target:  5'- gCCCgGGCUGCCuACGacgccgagcaGGCCCGCg -3'
miRNA:   3'- gGGGgCCGGCGG-UGUccag------CUGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 12098 0.66 0.354629
Target:  5'- gCCCCGGCaugccguaugaccaaGCacagcaGCAGGUCG-CCgaCGCa -3'
miRNA:   3'- gGGGGCCGg--------------CGg-----UGUCCAGCuGG--GCG- -5'
18777 5' -64.3 NC_004683.1 + 25561 0.66 0.353847
Target:  5'- gCCCUGGCCGCggucggcaacggCAC-GG-CGGCCguCGCa -3'
miRNA:   3'- gGGGGCCGGCG------------GUGuCCaGCUGG--GCG- -5'
18777 5' -64.3 NC_004683.1 + 7342 0.66 0.353847
Target:  5'- uCgUCUGGCCGUCGgGGGUCucgaucgagcuGGCCgGCc -3'
miRNA:   3'- -GgGGGCCGGCGGUgUCCAG-----------CUGGgCG- -5'
18777 5' -64.3 NC_004683.1 + 16584 0.66 0.353847
Target:  5'- gCCUauGgCGUCgauguGCGGGUCGACCUGUg -3'
miRNA:   3'- gGGGgcCgGCGG-----UGUCCAGCUGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 39615 0.66 0.353847
Target:  5'- gCCCguuccggggUGGgCGCCGcCGGGguggCGACCCGa -3'
miRNA:   3'- gGGG---------GCCgGCGGU-GUCCa---GCUGGGCg -5'
18777 5' -64.3 NC_004683.1 + 51195 0.66 0.349181
Target:  5'- cCCUUCGcGCCgGCCGCGccccgccaguagucGGugaacuucgcaugcUCGGCCCGCa -3'
miRNA:   3'- -GGGGGC-CGG-CGGUGU--------------CC--------------AGCUGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 24220 0.66 0.346095
Target:  5'- aCgCCCGGggugaugaCGUCACGcacuggcagcGGUgGGCCCGCg -3'
miRNA:   3'- -GgGGGCCg-------GCGGUGU----------CCAgCUGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 45961 0.66 0.346095
Target:  5'- -aCUCGGUgGCCAaGGGccgcaaacgcgUCGACUCGCa -3'
miRNA:   3'- ggGGGCCGgCGGUgUCC-----------AGCUGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 51670 0.66 0.346095
Target:  5'- -gCUCGGCCugGCgAC-GGUCGAgCCCGUc -3'
miRNA:   3'- ggGGGCCGG--CGgUGuCCAGCU-GGGCG- -5'
18777 5' -64.3 NC_004683.1 + 18967 0.66 0.346095
Target:  5'- cUCCCgGGCCGCCuccuGCGGaucgaaGUCgGGCgCCGUg -3'
miRNA:   3'- -GGGGgCCGGCGG----UGUC------CAG-CUG-GGCG- -5'
18777 5' -64.3 NC_004683.1 + 21571 0.66 0.341503
Target:  5'- gCCCCGgcuguggugaaugucGCCGCCAgCGGGgCGugugaggcgaaACCUGCg -3'
miRNA:   3'- gGGGGC---------------CGGCGGU-GUCCaGC-----------UGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 265 0.66 0.341503
Target:  5'- gCCCCagucaucggaaccggCGGCUGCUGgGGuGUCGACgCCGa -3'
miRNA:   3'- -GGGG---------------GCCGGCGGUgUC-CAGCUG-GGCg -5'
18777 5' -64.3 NC_004683.1 + 36375 0.66 0.338466
Target:  5'- aCCCCCuacCCGCgACAggacggauuucGGUCGAUCgCGCc -3'
miRNA:   3'- -GGGGGcc-GGCGgUGU-----------CCAGCUGG-GCG- -5'
18777 5' -64.3 NC_004683.1 + 12635 0.66 0.338466
Target:  5'- -gCCUGGCCgcggcGCCGCuGcUgGGCCCGCu -3'
miRNA:   3'- ggGGGCCGG-----CGGUGuCcAgCUGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 9775 0.66 0.338466
Target:  5'- gCCCCCGGCCagaucaacacGaCCugGCAGGUgaUGGCCaagcaGCu -3'
miRNA:   3'- -GGGGGCCGG----------C-GG--UGUCCA--GCUGGg----CG- -5'
18777 5' -64.3 NC_004683.1 + 28886 0.66 0.338466
Target:  5'- aCCCCUGacGCgGUCACGa-UCGAUCCGCc -3'
miRNA:   3'- -GGGGGC--CGgCGGUGUccAGCUGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 54393 0.66 0.336955
Target:  5'- -gCCCGGCCGCaacguccuguugGCGggccuGGUCGACgUGCu -3'
miRNA:   3'- ggGGGCCGGCGg-----------UGU-----CCAGCUGgGCG- -5'
18777 5' -64.3 NC_004683.1 + 20268 0.66 0.333947
Target:  5'- cCCCgCCGGUCguuccugguguugagGCCGCGGGcccgaUCGugCaCGCc -3'
miRNA:   3'- -GGG-GGCCGG---------------CGGUGUCC-----AGCugG-GCG- -5'
18777 5' -64.3 NC_004683.1 + 56855 0.66 0.331705
Target:  5'- gCCCaCCGGUCGacaccUCGCGGGcauggugaaggccccCGACCUGCg -3'
miRNA:   3'- -GGG-GGCCGGC-----GGUGUCCa--------------GCUGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.