miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18778 5' -56.6 NC_004683.1 + 30508 0.66 0.712369
Target:  5'- uGCCGAGgugGAuGUCGCUGAGG-CUgaugGCGGc -3'
miRNA:   3'- -CGGCUCa--CU-CGGUGGCUCUaGG----UGCC- -5'
18778 5' -56.6 NC_004683.1 + 1446 0.66 0.701879
Target:  5'- aGCCGAGgcgcucGCgGCCGAacUCgGCGGg -3'
miRNA:   3'- -CGGCUCacu---CGgUGGCUcuAGgUGCC- -5'
18778 5' -56.6 NC_004683.1 + 51608 0.66 0.701879
Target:  5'- uGCCGugcGUGAuggaucagGUCGCCGAugccGAUCgCGCGGu -3'
miRNA:   3'- -CGGCu--CACU--------CGGUGGCU----CUAG-GUGCC- -5'
18778 5' -56.6 NC_004683.1 + 45771 0.66 0.701879
Target:  5'- uUCGAGUacggGuGCgAUCGAGAUCCcCGGc -3'
miRNA:   3'- cGGCUCA----CuCGgUGGCUCUAGGuGCC- -5'
18778 5' -56.6 NC_004683.1 + 25176 0.66 0.700826
Target:  5'- cGCCGGGuUGGccagaccGCCACUGAGGa--ACGGg -3'
miRNA:   3'- -CGGCUC-ACU-------CGGUGGCUCUaggUGCC- -5'
18778 5' -56.6 NC_004683.1 + 25739 0.66 0.691324
Target:  5'- uGCgGGGUuugggcagGAccGCCACCGcGAUCgGCGGc -3'
miRNA:   3'- -CGgCUCA--------CU--CGGUGGCuCUAGgUGCC- -5'
18778 5' -56.6 NC_004683.1 + 25842 0.66 0.670063
Target:  5'- uGCCu-GUGcGCCACCuGGGUUCGCGa -3'
miRNA:   3'- -CGGcuCACuCGGUGGcUCUAGGUGCc -5'
18778 5' -56.6 NC_004683.1 + 7283 0.66 0.670063
Target:  5'- -aCGAacGUG-GCCACCGAGGUCU--GGa -3'
miRNA:   3'- cgGCU--CACuCGGUGGCUCUAGGugCC- -5'
18778 5' -56.6 NC_004683.1 + 48525 0.66 0.659376
Target:  5'- cCCGAuaGUGAGUCguguggacaGCCGA--UCCACGGc -3'
miRNA:   3'- cGGCU--CACUCGG---------UGGCUcuAGGUGCC- -5'
18778 5' -56.6 NC_004683.1 + 13836 0.66 0.655094
Target:  5'- cUCGAGUaccacaaccaucaGGCCACCGAGGaCCGCGc -3'
miRNA:   3'- cGGCUCAc------------UCGGUGGCUCUaGGUGCc -5'
18778 5' -56.6 NC_004683.1 + 2465 0.67 0.648665
Target:  5'- gGCCGgccAGUGu-CUGCUG-GAUCCGCGGg -3'
miRNA:   3'- -CGGC---UCACucGGUGGCuCUAGGUGCC- -5'
18778 5' -56.6 NC_004683.1 + 40934 0.67 0.63794
Target:  5'- cGCCGAGcUGAccgcGCCGCCGuuGcCCGuCGGc -3'
miRNA:   3'- -CGGCUC-ACU----CGGUGGCucUaGGU-GCC- -5'
18778 5' -56.6 NC_004683.1 + 24964 0.67 0.62721
Target:  5'- cGCCGA---GGCCACCGAcacGAUCCGg-- -3'
miRNA:   3'- -CGGCUcacUCGGUGGCU---CUAGGUgcc -5'
18778 5' -56.6 NC_004683.1 + 53234 0.67 0.62721
Target:  5'- uGCCGGGUGAGCgGugUCGGGGg-CGCGa -3'
miRNA:   3'- -CGGCUCACUCGgU--GGCUCUagGUGCc -5'
18778 5' -56.6 NC_004683.1 + 21246 0.67 0.605772
Target:  5'- cGUCG-GUGccgaCACCGuGGUCCGCGGc -3'
miRNA:   3'- -CGGCuCACucg-GUGGCuCUAGGUGCC- -5'
18778 5' -56.6 NC_004683.1 + 45066 0.68 0.59508
Target:  5'- cGCUgGAGUGGGCCaaucaGCCGAccGA-CCACGa -3'
miRNA:   3'- -CGG-CUCACUCGG-----UGGCU--CUaGGUGCc -5'
18778 5' -56.6 NC_004683.1 + 48043 0.68 0.59508
Target:  5'- cGCuCGaAGUaGuGCC-CCGGGGUgCCGCGGa -3'
miRNA:   3'- -CG-GC-UCA-CuCGGuGGCUCUA-GGUGCC- -5'
18778 5' -56.6 NC_004683.1 + 24656 0.68 0.584419
Target:  5'- gGCCGAG-GuAGCCGCCGAuGGgguagCCGacCGGc -3'
miRNA:   3'- -CGGCUCaC-UCGGUGGCU-CUa----GGU--GCC- -5'
18778 5' -56.6 NC_004683.1 + 30025 0.68 0.573795
Target:  5'- cGCCGAGcccgagagguaUGGGCCAUgGGGGUUUugGc -3'
miRNA:   3'- -CGGCUC-----------ACUCGGUGgCUCUAGGugCc -5'
18778 5' -56.6 NC_004683.1 + 48978 0.68 0.563217
Target:  5'- cGCCGgaaAGUaccgcGGGcCCGCCGcGAUCCACGc -3'
miRNA:   3'- -CGGC---UCA-----CUC-GGUGGCuCUAGGUGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.