miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18779 3' -58.9 NC_004683.1 + 15153 0.66 0.575422
Target:  5'- gGgGugGCCuG-GGUGAGgacgCCUUGCCg -3'
miRNA:   3'- gUgCugUGGuCgCCGCUCa---GGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 47586 0.66 0.575422
Target:  5'- gACGGCugC-GUGGCGGcGUUCggGCCg -3'
miRNA:   3'- gUGCUGugGuCGCCGCU-CAGGagCGG- -5'
18779 3' -58.9 NC_004683.1 + 14604 0.66 0.575422
Target:  5'- -------aCAGCGGCcAGUUCUCGCCc -3'
miRNA:   3'- gugcugugGUCGCCGcUCAGGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 12678 0.66 0.575422
Target:  5'- gCACGAgGuuGuCGGCGAGUCCggGCa -3'
miRNA:   3'- -GUGCUgUggUcGCCGCUCAGGagCGg -5'
18779 3' -58.9 NC_004683.1 + 52750 0.66 0.57437
Target:  5'- gGCGGuccuccaUACUGGCGGCGAugcguucggcgcGuUCCUCGUCg -3'
miRNA:   3'- gUGCU-------GUGGUCGCCGCU------------C-AGGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 9574 0.66 0.569117
Target:  5'- gGCGGCAUCAaCuGUGGGUucggcagcucccacgCCUCGCCg -3'
miRNA:   3'- gUGCUGUGGUcGcCGCUCA---------------GGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 41289 0.66 0.564924
Target:  5'- gGCGGCGuCCu-CGGCG-GcCUUCGCCg -3'
miRNA:   3'- gUGCUGU-GGucGCCGCuCaGGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 457 0.66 0.564924
Target:  5'- aGCGACGCCAGgcccgcacCGGUGucgacugucgaGGUCUccagccgcaUCGCCa -3'
miRNA:   3'- gUGCUGUGGUC--------GCCGC-----------UCAGG---------AGCGG- -5'
18779 3' -58.9 NC_004683.1 + 56153 0.66 0.564924
Target:  5'- uGCGgugccaGCGCCAgacGCGGCGGuGguuggCCUCGCa -3'
miRNA:   3'- gUGC------UGUGGU---CGCCGCU-Ca----GGAGCGg -5'
18779 3' -58.9 NC_004683.1 + 55773 0.66 0.564924
Target:  5'- gACGACGCCAGCGuuGAG-CagcggacggUCGCUg -3'
miRNA:   3'- gUGCUGUGGUCGCcgCUCaGg--------AGCGG- -5'
18779 3' -58.9 NC_004683.1 + 2284 0.66 0.564924
Target:  5'- aCACGGCACgCGGCacaGGCG-GUCgCg-GCCa -3'
miRNA:   3'- -GUGCUGUG-GUCG---CCGCuCAG-GagCGG- -5'
18779 3' -58.9 NC_004683.1 + 14547 0.66 0.564924
Target:  5'- gUACuACACCgaagagGGCGGUGGGUUCaucuaCGCCg -3'
miRNA:   3'- -GUGcUGUGG------UCGCCGCUCAGGa----GCGG- -5'
18779 3' -58.9 NC_004683.1 + 48513 0.66 0.554477
Target:  5'- uGCGAUcaauGCC-GCGccaGuGUCCUCGCCg -3'
miRNA:   3'- gUGCUG----UGGuCGCcg-CuCAGGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 49689 0.66 0.554477
Target:  5'- -gUGuCACCAGUGGUGGcUCgUCGUCa -3'
miRNA:   3'- guGCuGUGGUCGCCGCUcAGgAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 25476 0.66 0.554477
Target:  5'- --gGugGCCAccGCGGCGcuGGcCgUCGCCg -3'
miRNA:   3'- gugCugUGGU--CGCCGC--UCaGgAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 41665 0.66 0.554476
Target:  5'- gACGACACaucGCGGCuGAucgugaugcuGUUUUCGCCc -3'
miRNA:   3'- gUGCUGUGgu-CGCCG-CU----------CAGGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 13948 0.66 0.554476
Target:  5'- cCGCGugaugucaGCGCCGGC-GCG-GUCCUCggugGCCu -3'
miRNA:   3'- -GUGC--------UGUGGUCGcCGCuCAGGAG----CGG- -5'
18779 3' -58.9 NC_004683.1 + 15690 0.66 0.554476
Target:  5'- aGCGGCguGCCcGCGGCcacgaucuucGAGUCUgcgUUGCCg -3'
miRNA:   3'- gUGCUG--UGGuCGCCG----------CUCAGG---AGCGG- -5'
18779 3' -58.9 NC_004683.1 + 17909 0.66 0.554476
Target:  5'- aACGACAUCgAGUcuGGUGuuUCgUCGCCg -3'
miRNA:   3'- gUGCUGUGG-UCG--CCGCucAGgAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 39547 0.66 0.551353
Target:  5'- aCGCGGCAacguguuccgugauCCAcuuccaGGCGAgGUCCUgGCCg -3'
miRNA:   3'- -GUGCUGU--------------GGUcg----CCGCU-CAGGAgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.