miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18784 3' -61.9 NC_004683.1 + 1745 0.66 0.423674
Target:  5'- aUCGUCGaGGCCccaacCGCaCGGCcGCCAUg -3'
miRNA:   3'- -GGCAGCgCCGGa----GUG-GCCGaCGGUGu -5'
18784 3' -61.9 NC_004683.1 + 20618 0.66 0.423674
Target:  5'- gCCGUUGCcGCCggugcCGCCGGUgaucgUGCCGg- -3'
miRNA:   3'- -GGCAGCGcCGGa----GUGGCCG-----ACGGUgu -5'
18784 3' -61.9 NC_004683.1 + 50955 0.66 0.423674
Target:  5'- cCCGUCGCgcacagcgcuccGGCCgCACCcGCcGCCAa- -3'
miRNA:   3'- -GGCAGCG------------CCGGaGUGGcCGaCGGUgu -5'
18784 3' -61.9 NC_004683.1 + 44816 0.66 0.423674
Target:  5'- -aGUUGC-GCCUgGCCGaGCUGCaCGCc -3'
miRNA:   3'- ggCAGCGcCGGAgUGGC-CGACG-GUGu -5'
18784 3' -61.9 NC_004683.1 + 47284 0.66 0.418276
Target:  5'- cUCG-CGCGGCCgguggggugaccgcgUUGCCGGcCUGgCGCAc -3'
miRNA:   3'- -GGCaGCGCCGG---------------AGUGGCC-GACgGUGU- -5'
18784 3' -61.9 NC_004683.1 + 46563 0.66 0.4147
Target:  5'- gCCGgcaucgaGCGGU---ACUGGCUGCCGCu -3'
miRNA:   3'- -GGCag-----CGCCGgagUGGCCGACGGUGu -5'
18784 3' -61.9 NC_004683.1 + 45614 0.66 0.4147
Target:  5'- uUGUCGCGGCgC-CGCUG-CUGCCGu- -3'
miRNA:   3'- gGCAGCGCCG-GaGUGGCcGACGGUgu -5'
18784 3' -61.9 NC_004683.1 + 22061 0.66 0.412031
Target:  5'- gCCG-CGCGcgccagcaccacccGCCUgGCCGGUgaacucggcgGCCGCAc -3'
miRNA:   3'- -GGCaGCGC--------------CGGAgUGGCCGa---------CGGUGU- -5'
18784 3' -61.9 NC_004683.1 + 55002 0.66 0.405844
Target:  5'- gCGUCgGCGGCCUCGaucccgcauUCGGCgGCUGgGg -3'
miRNA:   3'- gGCAG-CGCCGGAGU---------GGCCGaCGGUgU- -5'
18784 3' -61.9 NC_004683.1 + 32694 0.66 0.405844
Target:  5'- gUCGUCuggcaGUGGCagcucgCGCCGGCUGgcCCGCGa -3'
miRNA:   3'- -GGCAG-----CGCCGga----GUGGCCGAC--GGUGU- -5'
18784 3' -61.9 NC_004683.1 + 9036 0.66 0.397109
Target:  5'- uCCGU--CGGCCUCGCCgGGCaGCUcCAc -3'
miRNA:   3'- -GGCAgcGCCGGAGUGG-CCGaCGGuGU- -5'
18784 3' -61.9 NC_004683.1 + 12933 0.66 0.397108
Target:  5'- cCUGcUCGaCGGCCgcccCACCGGUgGCCGg- -3'
miRNA:   3'- -GGC-AGC-GCCGGa---GUGGCCGaCGGUgu -5'
18784 3' -61.9 NC_004683.1 + 48523 0.66 0.397108
Target:  5'- gCCG-CGCcaguGuCCUCGCCGGCaccGUCACAa -3'
miRNA:   3'- -GGCaGCGc---C-GGAGUGGCCGa--CGGUGU- -5'
18784 3' -61.9 NC_004683.1 + 7431 0.66 0.388495
Target:  5'- gCCGUCGUaGaccaaCUCACCguccggcuuGGCUGCCAgCAc -3'
miRNA:   3'- -GGCAGCGcCg----GAGUGG---------CCGACGGU-GU- -5'
18784 3' -61.9 NC_004683.1 + 15884 0.66 0.388495
Target:  5'- -gGUCGCGGUCaCAgCGGCccuCCACAg -3'
miRNA:   3'- ggCAGCGCCGGaGUgGCCGac-GGUGU- -5'
18784 3' -61.9 NC_004683.1 + 2140 0.66 0.388494
Target:  5'- gCGggCGUGGCCgUGCUGGCggGCCugGg -3'
miRNA:   3'- gGCa-GCGCCGGaGUGGCCGa-CGGugU- -5'
18784 3' -61.9 NC_004683.1 + 18172 0.66 0.388494
Target:  5'- gCCGUCaCGGU--CACCGGCUcGUCGCc -3'
miRNA:   3'- -GGCAGcGCCGgaGUGGCCGA-CGGUGu -5'
18784 3' -61.9 NC_004683.1 + 43047 0.66 0.380004
Target:  5'- cCUGuUUGCGaGCCUCAgccUCGGCcuugcGCCACAu -3'
miRNA:   3'- -GGC-AGCGC-CGGAGU---GGCCGa----CGGUGU- -5'
18784 3' -61.9 NC_004683.1 + 51216 0.66 0.380004
Target:  5'- gCCGUCcagucggccuuGCGGCCcuucgCGCCGGCcgcGCCcCGc -3'
miRNA:   3'- -GGCAG-----------CGCCGGa----GUGGCCGa--CGGuGU- -5'
18784 3' -61.9 NC_004683.1 + 54033 0.66 0.379162
Target:  5'- aCGUCGaaacucggcagacCGGCCUCGUCGGCcauguccuuUGCCAUc -3'
miRNA:   3'- gGCAGC-------------GCCGGAGUGGCCG---------ACGGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.