miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18786 5' -55.8 NC_004683.1 + 14748 0.65 0.740629
Target:  5'- gGUUGUUGGUgGCGguCUGGaaguccuuguaggGCCCGGCc -3'
miRNA:   3'- gCAACGACUAgCGC--GGCUa------------UGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 44738 0.66 0.738561
Target:  5'- cCGagGCcGAcaagcUCGuCGCCGAgauccaaaccuacgACCCGGCg -3'
miRNA:   3'- -GCaaCGaCU-----AGC-GCGGCUa-------------UGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 2867 0.66 0.734412
Target:  5'- uGUcgUGCacuUCGCGCCGAUcccugACCCgcuGGCc -3'
miRNA:   3'- gCA--ACGacuAGCGCGGCUA-----UGGG---CCG- -5'
18786 5' -55.8 NC_004683.1 + 39087 0.66 0.734412
Target:  5'- uCGcgGCUGAccaauacgagCGCGCCGAauUGgCCGaGCa -3'
miRNA:   3'- -GCaaCGACUa---------GCGCGGCU--AUgGGC-CG- -5'
18786 5' -55.8 NC_004683.1 + 11986 0.66 0.734412
Target:  5'- cCGggGCUG-UCGC-CCGAucagcUAgCCGGUa -3'
miRNA:   3'- -GCaaCGACuAGCGcGGCU-----AUgGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 32204 0.66 0.734411
Target:  5'- uCGgcGCUGuUCGCGCCaGU--UCGGCg -3'
miRNA:   3'- -GCaaCGACuAGCGCGGcUAugGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 57041 0.66 0.734411
Target:  5'- uCGUcGCUGGUCacgaCGCCGAcccacccCCCGGg -3'
miRNA:   3'- -GCAaCGACUAGc---GCGGCUau-----GGGCCg -5'
18786 5' -55.8 NC_004683.1 + 5351 0.66 0.731289
Target:  5'- gGUUGCgUGccaucuucgaccaggCGCGCaGGUACgCCGGCg -3'
miRNA:   3'- gCAACG-ACua-------------GCGCGgCUAUG-GGCCG- -5'
18786 5' -55.8 NC_004683.1 + 39307 0.66 0.72397
Target:  5'- -aUUGUUGGacuUCGCGUgCGAacGCCUGGCg -3'
miRNA:   3'- gcAACGACU---AGCGCG-GCUa-UGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 46788 0.66 0.72397
Target:  5'- uCGUcagUGCUcGUCGCGUCGGUGCgCCa-- -3'
miRNA:   3'- -GCA---ACGAcUAGCGCGGCUAUG-GGccg -5'
18786 5' -55.8 NC_004683.1 + 23273 0.66 0.72397
Target:  5'- --cUGCUcGAcCGCaGcCCGGUcCCCGGCa -3'
miRNA:   3'- gcaACGA-CUaGCG-C-GGCUAuGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 242 0.66 0.713439
Target:  5'- --cUGCUGGggugUCGaCGCCGAggcgcuUGCCCcGCg -3'
miRNA:   3'- gcaACGACU----AGC-GCGGCU------AUGGGcCG- -5'
18786 5' -55.8 NC_004683.1 + 14886 0.66 0.713439
Target:  5'- gGUgcUGCUGAUCcCGCCGAU-CgUGGg -3'
miRNA:   3'- gCA--ACGACUAGcGCGGCUAuGgGCCg -5'
18786 5' -55.8 NC_004683.1 + 18629 0.66 0.713439
Target:  5'- uCGgcagGCUGAUgGCGCCGGUuggguuguaaccACCCcauGGa -3'
miRNA:   3'- -GCaa--CGACUAgCGCGGCUA------------UGGG---CCg -5'
18786 5' -55.8 NC_004683.1 + 34112 0.66 0.702831
Target:  5'- uCGgcgUGCUGGUCGCGUagCGugcGCCaCGGa -3'
miRNA:   3'- -GCa--ACGACUAGCGCG--GCua-UGG-GCCg -5'
18786 5' -55.8 NC_004683.1 + 22798 0.66 0.70283
Target:  5'- ---cGCUGAUacggugccgacgCGCGUCGAa--CCGGCg -3'
miRNA:   3'- gcaaCGACUA------------GCGCGGCUaugGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 13207 0.66 0.70283
Target:  5'- ---gGCaccGGUCcCGCCGAUGCCCcuccgGGCa -3'
miRNA:   3'- gcaaCGa--CUAGcGCGGCUAUGGG-----CCG- -5'
18786 5' -55.8 NC_004683.1 + 23919 0.66 0.692155
Target:  5'- gCGUggcgGCcGAcggcaucgUCGgGCCGGUcACCUGGCc -3'
miRNA:   3'- -GCAa---CGaCU--------AGCgCGGCUA-UGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 13137 0.66 0.692155
Target:  5'- ---gGCggGAcCgGUGCCGAUgACCCGGCc -3'
miRNA:   3'- gcaaCGa-CUaG-CGCGGCUA-UGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 7154 0.66 0.692155
Target:  5'- gCGUUGgUGggCGuCGCUGAgacgggugcGCCCGGg -3'
miRNA:   3'- -GCAACgACuaGC-GCGGCUa--------UGGGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.