miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18818 3' -63.3 NC_004683.1 + 56442 0.66 0.329939
Target:  5'- aUGGCCUuggugcUGUCGUgGGUGAGCagccCGUCg -3'
miRNA:   3'- aGCCGGA------GCGGCAgCCGCUCGc---GCAG- -5'
18818 3' -63.3 NC_004683.1 + 55974 0.68 0.273562
Target:  5'- gUUGGCCUUGaauaCGgUGGCGAcGCGCGg- -3'
miRNA:   3'- -AGCCGGAGCg---GCaGCCGCU-CGCGCag -5'
18818 3' -63.3 NC_004683.1 + 53713 0.66 0.322446
Target:  5'- gCGGCCagGUCG-CGGCGGGCcugaucGCGcCg -3'
miRNA:   3'- aGCCGGagCGGCaGCCGCUCG------CGCaG- -5'
18818 3' -63.3 NC_004683.1 + 53600 0.66 0.33756
Target:  5'- cCGGCCgcgucuUCGCCGcCGaGCugcGGCGCGaUCa -3'
miRNA:   3'- aGCCGG------AGCGGCaGC-CGc--UCGCGC-AG- -5'
18818 3' -63.3 NC_004683.1 + 52223 0.67 0.31508
Target:  5'- gUCGGUCgggucCGCC-UCGGCGAcccgggccgGCGCGg- -3'
miRNA:   3'- -AGCCGGa----GCGGcAGCCGCU---------CGCGCag -5'
18818 3' -63.3 NC_004683.1 + 51847 0.68 0.260731
Target:  5'- -gGGCCUCGCguuuggcggCGaaguacUCGGCGAGgGCGg- -3'
miRNA:   3'- agCCGGAGCG---------GC------AGCCGCUCgCGCag -5'
18818 3' -63.3 NC_004683.1 + 51669 0.68 0.248395
Target:  5'- cUCGGCCUgG-CGaCGGuCGAGCcCGUCg -3'
miRNA:   3'- -AGCCGGAgCgGCaGCC-GCUCGcGCAG- -5'
18818 3' -63.3 NC_004683.1 + 51588 0.78 0.045976
Target:  5'- gUCGccgauGCCgaucgCGCgGUCGGUGGGCGCGUCg -3'
miRNA:   3'- -AGC-----CGGa----GCGgCAGCCGCUCGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 50319 0.67 0.300732
Target:  5'- aCcGCCUCGUCGaugUCGGCcaagacuggcuuGAGCGUGUUg -3'
miRNA:   3'- aGcCGGAGCGGC---AGCCG------------CUCGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 48922 0.67 0.31508
Target:  5'- gCGGCCgUCGaguuCG-CGGCcAGCGCGUUu -3'
miRNA:   3'- aGCCGG-AGCg---GCaGCCGcUCGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 46683 0.66 0.321703
Target:  5'- gCGGCCUUGCCGUCgcggcccucgaccGGCaccAGCaGCGg- -3'
miRNA:   3'- aGCCGGAGCGGCAG-------------CCGc--UCG-CGCag -5'
18818 3' -63.3 NC_004683.1 + 46408 0.66 0.361185
Target:  5'- gCGGaCCUgccCGCaCGUCGGgcacaccgccuCGGGCcGCGUCa -3'
miRNA:   3'- aGCC-GGA---GCG-GCAGCC-----------GCUCG-CGCAG- -5'
18818 3' -63.3 NC_004683.1 + 46005 0.67 0.31508
Target:  5'- cCGGgCUCGCCcagagaauGUCGGUGcgcgggaaccGGCGCGg- -3'
miRNA:   3'- aGCCgGAGCGG--------CAGCCGC----------UCGCGCag -5'
18818 3' -63.3 NC_004683.1 + 45575 0.69 0.236546
Target:  5'- gUGGCgacgaGCCgGUCGGUgcgGGGCGCGUCg -3'
miRNA:   3'- aGCCGgag--CGG-CAGCCG---CUCGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 44939 0.72 0.124941
Target:  5'- cUCGGCCUCcagGCCGggccaccaCGGCGAuuGCGCGa- -3'
miRNA:   3'- -AGCCGGAG---CGGCa-------GCCGCU--CGCGCag -5'
18818 3' -63.3 NC_004683.1 + 44804 0.9 0.005836
Target:  5'- gUCGGCCUCGgcguagugguaCGUCGGCGGGCGCGUCa -3'
miRNA:   3'- -AGCCGGAGCg----------GCAGCCGCUCGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 44679 0.71 0.170673
Target:  5'- uUC-GCCUCGUCGaacgugaggUCGGCGGcGCGCGUg -3'
miRNA:   3'- -AGcCGGAGCGGC---------AGCCGCU-CGCGCAg -5'
18818 3' -63.3 NC_004683.1 + 44545 0.67 0.307842
Target:  5'- aUUGGCCaUCuGCaCGUCgGGCGccGGCGCGg- -3'
miRNA:   3'- -AGCCGG-AG-CG-GCAG-CCGC--UCGCGCag -5'
18818 3' -63.3 NC_004683.1 + 44455 0.66 0.361185
Target:  5'- cUCGGCgauCUCGCCGUCGauguaGUcGGC-CGUCg -3'
miRNA:   3'- -AGCCG---GAGCGGCAGC-----CGcUCGcGCAG- -5'
18818 3' -63.3 NC_004683.1 + 44359 0.71 0.158
Target:  5'- gUCGGCgcggaUCGCCG-CGuCGAGCcGCGUCg -3'
miRNA:   3'- -AGCCGg----AGCGGCaGCcGCUCG-CGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.