miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18825 3' -61.3 NC_004683.1 + 56098 0.66 0.480264
Target:  5'- gUCGACGGagacgaagUCggcgGCGGUgGUGGUGGCg- -3'
miRNA:   3'- -GGCUGCC--------AGa---CGCCAgCGCCGUCGgg -5'
18825 3' -61.3 NC_004683.1 + 5257 0.66 0.480264
Target:  5'- cUCGAUGaUCU-UGGUgGCGGCGGCgCg -3'
miRNA:   3'- -GGCUGCcAGAcGCCAgCGCCGUCGgG- -5'
18825 3' -61.3 NC_004683.1 + 4541 0.66 0.480264
Target:  5'- uCCGAgCGGguggaucgCUGCGcGUCGuCGGacuCGGCCg -3'
miRNA:   3'- -GGCU-GCCa-------GACGC-CAGC-GCC---GUCGGg -5'
18825 3' -61.3 NC_004683.1 + 325 0.66 0.480264
Target:  5'- cCCGccGCGGgcagcagCgGCGGcaUCGCGGC-GCUCg -3'
miRNA:   3'- -GGC--UGCCa------GaCGCC--AGCGCCGuCGGG- -5'
18825 3' -61.3 NC_004683.1 + 11699 0.66 0.480264
Target:  5'- gCGACGGgagcgCUGCa---GCGGCAcGCCg -3'
miRNA:   3'- gGCUGCCa----GACGccagCGCCGU-CGGg -5'
18825 3' -61.3 NC_004683.1 + 25546 0.66 0.459376
Target:  5'- cUCGGCcuGGUCgccgcccuggccGCGGUCGgcaacggcaCGGCGGCCg -3'
miRNA:   3'- -GGCUG--CCAGa-----------CGCCAGC---------GCCGUCGGg -5'
18825 3' -61.3 NC_004683.1 + 250 0.66 0.4519
Target:  5'- aCCGGCGGcugCUGgGGUgucgaCGCcgaGGCGcuuGCCCc -3'
miRNA:   3'- -GGCUGCCa--GACgCCA-----GCG---CCGU---CGGG- -5'
18825 3' -61.3 NC_004683.1 + 28637 0.66 0.4519
Target:  5'- gCCGACGGcCgagacuugGCGG-CGCucGGCGuGCCg -3'
miRNA:   3'- -GGCUGCCaGa-------CGCCaGCG--CCGU-CGGg -5'
18825 3' -61.3 NC_004683.1 + 50480 0.66 0.4519
Target:  5'- -gGAUGGUgcccCUGCGuaCGCGGguGCCa -3'
miRNA:   3'- ggCUGCCA----GACGCcaGCGCCguCGGg -5'
18825 3' -61.3 NC_004683.1 + 20569 0.66 0.442651
Target:  5'- cCUGGCGGg--GCgucuGGUgGCGGCGGUgCg -3'
miRNA:   3'- -GGCUGCCagaCG----CCAgCGCCGUCGgG- -5'
18825 3' -61.3 NC_004683.1 + 10205 0.66 0.442651
Target:  5'- gCCGGCGuacUUGCuGG-CGCGGUAGgCCg -3'
miRNA:   3'- -GGCUGCca-GACG-CCaGCGCCGUCgGG- -5'
18825 3' -61.3 NC_004683.1 + 20299 0.66 0.433509
Target:  5'- cCCGGcCGGg--GCGGcgacgGCGGCAGCgCg -3'
miRNA:   3'- -GGCU-GCCagaCGCCag---CGCCGUCGgG- -5'
18825 3' -61.3 NC_004683.1 + 38483 0.66 0.433509
Target:  5'- cUCGGCGaacaUGUGGUCGCaGaCGGCCUg -3'
miRNA:   3'- -GGCUGCcag-ACGCCAGCGcC-GUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 38836 0.66 0.433509
Target:  5'- aCGACGGUUUcgaGGUCGUGGCccguUCCg -3'
miRNA:   3'- gGCUGCCAGAcg-CCAGCGCCGuc--GGG- -5'
18825 3' -61.3 NC_004683.1 + 56446 0.67 0.424478
Target:  5'- gUCGAUGGcCuuggUGCuGUCGUGggugaGCAGCCCg -3'
miRNA:   3'- -GGCUGCCaG----ACGcCAGCGC-----CGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 18367 0.67 0.41556
Target:  5'- gCGACGGUCUaccugauggccGagaaGGUCgGCGGUgcGGCCa -3'
miRNA:   3'- gGCUGCCAGA-----------Cg---CCAG-CGCCG--UCGGg -5'
18825 3' -61.3 NC_004683.1 + 431 0.67 0.41556
Target:  5'- -aGGCGGUg-GCuGG-CGCGGCGGUCg -3'
miRNA:   3'- ggCUGCCAgaCG-CCaGCGCCGUCGGg -5'
18825 3' -61.3 NC_004683.1 + 20086 0.67 0.41556
Target:  5'- gUCGAUGGUggccucgGCGGuaUCGaCGGCGGCUa -3'
miRNA:   3'- -GGCUGCCAga-----CGCC--AGC-GCCGUCGGg -5'
18825 3' -61.3 NC_004683.1 + 44778 0.67 0.41556
Target:  5'- cCCGGCGG-CgGCGGgcCGCGu--GCCCg -3'
miRNA:   3'- -GGCUGCCaGaCGCCa-GCGCcguCGGG- -5'
18825 3' -61.3 NC_004683.1 + 31292 0.67 0.397212
Target:  5'- aCCGGgGGUugugcagCUGCGGgcCGUGGCGGUg- -3'
miRNA:   3'- -GGCUgCCA-------GACGCCa-GCGCCGUCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.