miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18911 5' -60.8 NC_004683.1 + 31500 0.66 0.469708
Target:  5'- --cGCucGCCugGGACcaGGCGUAGGCCGa -3'
miRNA:   3'- gcaCGu-CGG--CCUGcaCCGCGUCUGGC- -5'
18911 5' -60.8 NC_004683.1 + 19866 0.66 0.469708
Target:  5'- gCG-GCAGCacCGGAacgGUGGCugagauccgGCAGACCa -3'
miRNA:   3'- -GCaCGUCG--GCCUg--CACCG---------CGUCUGGc -5'
18911 5' -60.8 NC_004683.1 + 32708 0.66 0.469708
Target:  5'- --cGCGGCguaGGacucgGCGUaGGCGCGGGCCc -3'
miRNA:   3'- gcaCGUCGg--CC-----UGCA-CCGCGUCUGGc -5'
18911 5' -60.8 NC_004683.1 + 3397 0.66 0.468745
Target:  5'- gGUGCGGCCGG-CGUcugccgcGGCGUu-GCCc -3'
miRNA:   3'- gCACGUCGGCCuGCA-------CCGCGucUGGc -5'
18911 5' -60.8 NC_004683.1 + 9815 0.66 0.45064
Target:  5'- --aGCAGCUGGAgGaucGGCGCcGAgCCGa -3'
miRNA:   3'- gcaCGUCGGCCUgCa--CCGCGuCU-GGC- -5'
18911 5' -60.8 NC_004683.1 + 8425 0.66 0.449698
Target:  5'- aGUGCAGCCcGACGUuugugacGGUGCcGGCg- -3'
miRNA:   3'- gCACGUCGGcCUGCA-------CCGCGuCUGgc -5'
18911 5' -60.8 NC_004683.1 + 39632 0.66 0.441267
Target:  5'- --cGCcGCCGGG-GUGGCGacccgaGGGCCGc -3'
miRNA:   3'- gcaCGuCGGCCUgCACCGCg-----UCUGGC- -5'
18911 5' -60.8 NC_004683.1 + 6953 0.66 0.440336
Target:  5'- --gGCGG-CGGGCgGUGGUGCAGcucgucgGCCGg -3'
miRNA:   3'- gcaCGUCgGCCUG-CACCGCGUC-------UGGC- -5'
18911 5' -60.8 NC_004683.1 + 412 0.66 0.432006
Target:  5'- -cUGCGGgCGG-UGaUGGCGCAGGCgGu -3'
miRNA:   3'- gcACGUCgGCCuGC-ACCGCGUCUGgC- -5'
18911 5' -60.8 NC_004683.1 + 38564 0.66 0.432006
Target:  5'- --cGgGGCagGGAUGUGGCGUAGgugGCCGc -3'
miRNA:   3'- gcaCgUCGg-CCUGCACCGCGUC---UGGC- -5'
18911 5' -60.8 NC_004683.1 + 28573 0.66 0.432006
Target:  5'- --aGCAGUCGGcuuugggggagGCGgGGUGuCGGACCGg -3'
miRNA:   3'- gcaCGUCGGCC-----------UGCaCCGC-GUCUGGC- -5'
18911 5' -60.8 NC_004683.1 + 44133 0.66 0.432006
Target:  5'- aGUaGCGGCCugccgGGACGuUGGCcaGCAGcGCCGc -3'
miRNA:   3'- gCA-CGUCGG-----CCUGC-ACCG--CGUC-UGGC- -5'
18911 5' -60.8 NC_004683.1 + 45532 0.66 0.432006
Target:  5'- aGUGCGGUgaGGGCGgucuUGGUGguGuCCGa -3'
miRNA:   3'- gCACGUCGg-CCUGC----ACCGCguCuGGC- -5'
18911 5' -60.8 NC_004683.1 + 28401 0.66 0.422858
Target:  5'- --cGCAGCCGG----GGCGCGGGCgGu -3'
miRNA:   3'- gcaCGUCGGCCugcaCCGCGUCUGgC- -5'
18911 5' -60.8 NC_004683.1 + 34902 0.67 0.39613
Target:  5'- aCGUGCGGCaCGGGCuuGUuugcGGCGCuGGCa- -3'
miRNA:   3'- -GCACGUCG-GCCUG--CA----CCGCGuCUGgc -5'
18911 5' -60.8 NC_004683.1 + 12027 0.67 0.39613
Target:  5'- uCGUG-AGCCGGguuucgACGgcaGGCGCuGGCCa -3'
miRNA:   3'- -GCACgUCGGCC------UGCa--CCGCGuCUGGc -5'
18911 5' -60.8 NC_004683.1 + 32885 0.67 0.39613
Target:  5'- --aGCAGCgCGGGCcagcccuUGGCcuGCGGGCCGa -3'
miRNA:   3'- gcaCGUCG-GCCUGc------ACCG--CGUCUGGC- -5'
18911 5' -60.8 NC_004683.1 + 55480 0.67 0.390917
Target:  5'- -cUGCAGCUuguuGACGUacacaccgaacgccaGGCGCGGGCCu -3'
miRNA:   3'- gcACGUCGGc---CUGCA---------------CCGCGUCUGGc -5'
18911 5' -60.8 NC_004683.1 + 36127 0.67 0.390917
Target:  5'- --cGCGGCCGGugGcGGUcacgaaacugacccgGguGACCGc -3'
miRNA:   3'- gcaCGUCGGCCugCaCCG---------------CguCUGGC- -5'
18911 5' -60.8 NC_004683.1 + 21554 0.67 0.387466
Target:  5'- aCGUGauccuGCUGGGCGgcGGCGguGGCgGg -3'
miRNA:   3'- -GCACgu---CGGCCUGCa-CCGCguCUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.