miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18959 3' -55.4 NC_004683.1 + 2465 0.66 0.751489
Target:  5'- gGCG-AACGGUCcGGuguucGCGugCAUGCu -3'
miRNA:   3'- gCGCuUUGCCAGcUC-----CGCugGUACGu -5'
18959 3' -55.4 NC_004683.1 + 24585 0.66 0.74116
Target:  5'- gGCGGcuaccuCGGcCucauggGAGGCGACCcgGCAu -3'
miRNA:   3'- gCGCUuu----GCCaG------CUCCGCUGGuaCGU- -5'
18959 3' -55.4 NC_004683.1 + 2749 0.66 0.74116
Target:  5'- uGCGcgGCGGcCGcGGCGAgCUcgGCGg -3'
miRNA:   3'- gCGCuuUGCCaGCuCCGCU-GGuaCGU- -5'
18959 3' -55.4 NC_004683.1 + 27022 0.66 0.730723
Target:  5'- uCGCGGguGACGGUCGcGGUGuaguucauCCGaGCAa -3'
miRNA:   3'- -GCGCU--UUGCCAGCuCCGCu-------GGUaCGU- -5'
18959 3' -55.4 NC_004683.1 + 41800 0.66 0.730723
Target:  5'- gGCaGGucucGCGG-CGAGGUGACCAccGCGa -3'
miRNA:   3'- gCG-CUu---UGCCaGCUCCGCUGGUa-CGU- -5'
18959 3' -55.4 NC_004683.1 + 42242 0.66 0.720189
Target:  5'- gGCGuGAAUGGUCG-GGCGgacggaccGCCA-GCAg -3'
miRNA:   3'- gCGC-UUUGCCAGCuCCGC--------UGGUaCGU- -5'
18959 3' -55.4 NC_004683.1 + 49142 0.66 0.709569
Target:  5'- cCGCGgcGCGGugacccauUCGGGcGCGugcaucgguaGCCGUGCGa -3'
miRNA:   3'- -GCGCuuUGCC--------AGCUC-CGC----------UGGUACGU- -5'
18959 3' -55.4 NC_004683.1 + 1661 0.66 0.698874
Target:  5'- gGCGGccguGCGGUUGGGGCcucGACgAUcGCAg -3'
miRNA:   3'- gCGCUu---UGCCAGCUCCG---CUGgUA-CGU- -5'
18959 3' -55.4 NC_004683.1 + 33926 0.67 0.688116
Target:  5'- uGCGG--UGGUCccGGCGACCGcGCGa -3'
miRNA:   3'- gCGCUuuGCCAGcuCCGCUGGUaCGU- -5'
18959 3' -55.4 NC_004683.1 + 55927 0.67 0.688116
Target:  5'- cCGUGGAGCuGGUgGAGGCauaaguGACCAccaucgGCAu -3'
miRNA:   3'- -GCGCUUUG-CCAgCUCCG------CUGGUa-----CGU- -5'
18959 3' -55.4 NC_004683.1 + 53112 0.67 0.688116
Target:  5'- gGcCGggGCGuucGUCguugGAGGUGACCAUGUc -3'
miRNA:   3'- gC-GCuuUGC---CAG----CUCCGCUGGUACGu -5'
18959 3' -55.4 NC_004683.1 + 51689 0.67 0.688116
Target:  5'- aCGCc--GCGGuUCGAGGCaGCCGaGCAg -3'
miRNA:   3'- -GCGcuuUGCC-AGCUCCGcUGGUaCGU- -5'
18959 3' -55.4 NC_004683.1 + 41863 0.67 0.666451
Target:  5'- gGCGcAACGGUCGucacuGGCaGGCCGagggGCGc -3'
miRNA:   3'- gCGCuUUGCCAGCu----CCG-CUGGUa---CGU- -5'
18959 3' -55.4 NC_004683.1 + 52754 0.67 0.655565
Target:  5'- -uCGggGCGGUCcuccauacuGGCGGCgAUGCGu -3'
miRNA:   3'- gcGCuuUGCCAGcu-------CCGCUGgUACGU- -5'
18959 3' -55.4 NC_004683.1 + 45282 0.67 0.644659
Target:  5'- gGCGAGcgcGCGGUCGAaucGGUgaacgccgaacGACCggGCAa -3'
miRNA:   3'- gCGCUU---UGCCAGCU---CCG-----------CUGGuaCGU- -5'
18959 3' -55.4 NC_004683.1 + 55842 0.67 0.644659
Target:  5'- aGCGAucUGGUCGGcguggucuGCGGCCAUGUc -3'
miRNA:   3'- gCGCUuuGCCAGCUc-------CGCUGGUACGu -5'
18959 3' -55.4 NC_004683.1 + 33839 0.67 0.644659
Target:  5'- uGCGAGcucgcGCGGUCGccGgGACCAccGCAg -3'
miRNA:   3'- gCGCUU-----UGCCAGCucCgCUGGUa-CGU- -5'
18959 3' -55.4 NC_004683.1 + 25566 0.68 0.622821
Target:  5'- gGCc--GCGGUCGGcaacggcacGGCGGCCGUcGCAg -3'
miRNA:   3'- gCGcuuUGCCAGCU---------CCGCUGGUA-CGU- -5'
18959 3' -55.4 NC_004683.1 + 20572 0.68 0.61191
Target:  5'- gGCGggGCGucUGGuGGCGGCgGUGCGg -3'
miRNA:   3'- gCGCuuUGCcaGCU-CCGCUGgUACGU- -5'
18959 3' -55.4 NC_004683.1 + 32692 0.68 0.601016
Target:  5'- gGCGAAGCGuaCGAGGCGAgCG-GCu -3'
miRNA:   3'- gCGCUUUGCcaGCUCCGCUgGUaCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.