miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18959 5' -59.5 NC_004683.1 + 46096 0.66 0.537511
Target:  5'- --aGGCCGUCAUCgucgagaacgUCGugGACgCGUGg -3'
miRNA:   3'- cuaCCGGCGGUAGg---------AGCugCUG-GCGC- -5'
18959 5' -59.5 NC_004683.1 + 55707 0.66 0.537511
Target:  5'- -cUGG-CGUCGUCggCGGCGACCGUc -3'
miRNA:   3'- cuACCgGCGGUAGgaGCUGCUGGCGc -5'
18959 5' -59.5 NC_004683.1 + 54934 0.66 0.537511
Target:  5'- --cGGUCGCCA-CUUCGcucucaccgGCGcCCGCGg -3'
miRNA:   3'- cuaCCGGCGGUaGGAGC---------UGCuGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 56779 0.66 0.537511
Target:  5'- --gGGCUcaGuCCGUUCUCGAUGcACCGCc -3'
miRNA:   3'- cuaCCGG--C-GGUAGGAGCUGC-UGGCGc -5'
18959 5' -59.5 NC_004683.1 + 42716 0.66 0.527244
Target:  5'- --cGGCCGCCGaUCUCGucGCGGgcgucgUCGCGg -3'
miRNA:   3'- cuaCCGGCGGUaGGAGC--UGCU------GGCGC- -5'
18959 5' -59.5 NC_004683.1 + 8720 0.66 0.526221
Target:  5'- ---aGCUGcCCAUCCUgggcgagCGGCGACCaGCGa -3'
miRNA:   3'- cuacCGGC-GGUAGGA-------GCUGCUGG-CGC- -5'
18959 5' -59.5 NC_004683.1 + 24376 0.66 0.517051
Target:  5'- --cGGUCGCgaucaccggUGUCUUCGACGAggccaCCGCGg -3'
miRNA:   3'- cuaCCGGCG---------GUAGGAGCUGCU-----GGCGC- -5'
18959 5' -59.5 NC_004683.1 + 3740 0.66 0.517051
Target:  5'- --cGGCC-UCAcCCUCGACGGCuacggCGCGg -3'
miRNA:   3'- cuaCCGGcGGUaGGAGCUGCUG-----GCGC- -5'
18959 5' -59.5 NC_004683.1 + 49342 0.66 0.517051
Target:  5'- --cGGCUGCCcgCaccaCGACGGCCGg- -3'
miRNA:   3'- cuaCCGGCGGuaGga--GCUGCUGGCgc -5'
18959 5' -59.5 NC_004683.1 + 8862 0.66 0.517051
Target:  5'- -cUGGUCGUCggUgUCGAugcuCGGCCGCGa -3'
miRNA:   3'- cuACCGGCGGuaGgAGCU----GCUGGCGC- -5'
18959 5' -59.5 NC_004683.1 + 3752 0.66 0.516036
Target:  5'- --gGGCCuGCCGcacacucUCCagCGGCGGCCGgGc -3'
miRNA:   3'- cuaCCGG-CGGU-------AGGa-GCUGCUGGCgC- -5'
18959 5' -59.5 NC_004683.1 + 363 0.66 0.506938
Target:  5'- --cGGCCGCgGucagcUCCUUGACcACCGUc -3'
miRNA:   3'- cuaCCGGCGgU-----AGGAGCUGcUGGCGc -5'
18959 5' -59.5 NC_004683.1 + 26784 0.66 0.506938
Target:  5'- cGAU-GCCGCCGgcgCaCUCGACGugacACCGgGg -3'
miRNA:   3'- -CUAcCGGCGGUa--G-GAGCUGC----UGGCgC- -5'
18959 5' -59.5 NC_004683.1 + 25564 0.66 0.496909
Target:  5'- -cUGGCCGCgGUCggcaacggcaCGGCGGCCGUc -3'
miRNA:   3'- cuACCGGCGgUAGga--------GCUGCUGGCGc -5'
18959 5' -59.5 NC_004683.1 + 6553 0.66 0.496909
Target:  5'- --gGcGCUGgCGUCCUCGACGcuGgCGCGa -3'
miRNA:   3'- cuaC-CGGCgGUAGGAGCUGC--UgGCGC- -5'
18959 5' -59.5 NC_004683.1 + 28718 0.66 0.486971
Target:  5'- --aGcGCCGCCAagUCUCGGCcgucGGCCGCc -3'
miRNA:   3'- cuaC-CGGCGGUa-GGAGCUG----CUGGCGc -5'
18959 5' -59.5 NC_004683.1 + 22645 0.66 0.486971
Target:  5'- --aGGCCGcCCAUCgaCGcGCGugCGCc -3'
miRNA:   3'- cuaCCGGC-GGUAGgaGC-UGCugGCGc -5'
18959 5' -59.5 NC_004683.1 + 31389 0.66 0.486971
Target:  5'- uGUGGCgguagGCCAgcaCUgCGGCGACCGCc -3'
miRNA:   3'- cUACCGg----CGGUag-GA-GCUGCUGGCGc -5'
18959 5' -59.5 NC_004683.1 + 10281 0.67 0.477128
Target:  5'- --cGGCgGCCuguUCCUCGGC--CCGCu -3'
miRNA:   3'- cuaCCGgCGGu--AGGAGCUGcuGGCGc -5'
18959 5' -59.5 NC_004683.1 + 25133 0.67 0.477128
Target:  5'- -cUGGCCGCCGUCaccggugCGgguaGCGGCCuGCu -3'
miRNA:   3'- cuACCGGCGGUAGga-----GC----UGCUGG-CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.