miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18960 5' -63 NC_004683.1 + 40159 0.66 0.392464
Target:  5'- gCGCugGGCccGGgCGAacaGCGCgUCGAcGCg -3'
miRNA:   3'- -GCGugCCG--CCgGCUgg-CGCG-AGCU-CG- -5'
18960 5' -63 NC_004683.1 + 44428 0.66 0.392464
Target:  5'- gGCcguCGGCuugacGGUCGACgGCaGCgCGAGCg -3'
miRNA:   3'- gCGu--GCCG-----CCGGCUGgCG-CGaGCUCG- -5'
18960 5' -63 NC_004683.1 + 51543 0.66 0.392464
Target:  5'- aCGCACGGCaGGCgCGccGCCaGCGCacgcagaaCGAGg -3'
miRNA:   3'- -GCGUGCCG-CCG-GC--UGG-CGCGa-------GCUCg -5'
18960 5' -63 NC_004683.1 + 5568 0.66 0.391614
Target:  5'- uGCACGGCcGCCGaggacacGCCGUGCcacacaUCGccgguGGCg -3'
miRNA:   3'- gCGUGCCGcCGGC-------UGGCGCG------AGC-----UCG- -5'
18960 5' -63 NC_004683.1 + 19215 0.66 0.389918
Target:  5'- aGUACgaaucccuGGUGGCCGccGCCgggucgaacgcgguGCGCgUCGAGCu -3'
miRNA:   3'- gCGUG--------CCGCCGGC--UGG--------------CGCG-AGCUCG- -5'
18960 5' -63 NC_004683.1 + 18520 0.66 0.384019
Target:  5'- gGuCACGGCaGCgGcACCGCGUUCauguugaaccgGGGCa -3'
miRNA:   3'- gC-GUGCCGcCGgC-UGGCGCGAG-----------CUCG- -5'
18960 5' -63 NC_004683.1 + 42649 0.66 0.384019
Target:  5'- cCGcCGCGGCGcGCuCGGCCuCGCUCauGGUg -3'
miRNA:   3'- -GC-GUGCCGC-CG-GCUGGcGCGAGc-UCG- -5'
18960 5' -63 NC_004683.1 + 30861 0.66 0.384019
Target:  5'- cCGgGCGGCGugcgcaGCCGACgGUGCgcCGGuGCg -3'
miRNA:   3'- -GCgUGCCGC------CGGCUGgCGCGa-GCU-CG- -5'
18960 5' -63 NC_004683.1 + 46550 0.66 0.384019
Target:  5'- gGCGCGGauccgGGCCGGCa----UCGAGCg -3'
miRNA:   3'- gCGUGCCg----CCGGCUGgcgcgAGCUCG- -5'
18960 5' -63 NC_004683.1 + 12715 0.66 0.384019
Target:  5'- gGCAuccuCGGCGcGCgGGgCGCGUUCGGuccGCa -3'
miRNA:   3'- gCGU----GCCGC-CGgCUgGCGCGAGCU---CG- -5'
18960 5' -63 NC_004683.1 + 16397 0.66 0.383181
Target:  5'- gCGCGCcuGGUucGGaucgaucCUGACCGCGaUCGAGCg -3'
miRNA:   3'- -GCGUG--CCG--CC-------GGCUGGCGCgAGCUCG- -5'
18960 5' -63 NC_004683.1 + 54150 0.66 0.381509
Target:  5'- aCGC-CGaGCGGCCaaaggucaacGGCCGCGCgcucaucaaggccaUCGcGCa -3'
miRNA:   3'- -GCGuGC-CGCCGG----------CUGGCGCG--------------AGCuCG- -5'
18960 5' -63 NC_004683.1 + 3647 0.66 0.381509
Target:  5'- cCGgGCGGCaagaguugaacgcuGGUCaGGCCgguGUGCUUGAGCa -3'
miRNA:   3'- -GCgUGCCG--------------CCGG-CUGG---CGCGAGCUCG- -5'
18960 5' -63 NC_004683.1 + 35748 0.66 0.375695
Target:  5'- uCGgGCGGCauaGUCG-CCGCGCUUgGAGUc -3'
miRNA:   3'- -GCgUGCCGc--CGGCuGGCGCGAG-CUCG- -5'
18960 5' -63 NC_004683.1 + 27300 0.66 0.375695
Target:  5'- uCGCuCGGCGGCauCGAgaCGCGCcagCGcGGCa -3'
miRNA:   3'- -GCGuGCCGCCG--GCUg-GCGCGa--GC-UCG- -5'
18960 5' -63 NC_004683.1 + 46836 0.66 0.375695
Target:  5'- cCGCugGccaCGGUC-ACCGCG-UCGGGCa -3'
miRNA:   3'- -GCGugCc--GCCGGcUGGCGCgAGCUCG- -5'
18960 5' -63 NC_004683.1 + 10130 0.66 0.375695
Target:  5'- uCGcCGCcGCGGCCGAaCG-GCUCG-GCg -3'
miRNA:   3'- -GC-GUGcCGCCGGCUgGCgCGAGCuCG- -5'
18960 5' -63 NC_004683.1 + 3435 0.66 0.375695
Target:  5'- aGgAC-GCGGCCGAcauccagaagguCCGCGC-CGAGa -3'
miRNA:   3'- gCgUGcCGCCGGCU------------GGCGCGaGCUCg -5'
18960 5' -63 NC_004683.1 + 47730 0.66 0.367493
Target:  5'- uCGuCGCGGCGuuCGAuguccuCUGCGCUCaGGCg -3'
miRNA:   3'- -GC-GUGCCGCcgGCU------GGCGCGAGcUCG- -5'
18960 5' -63 NC_004683.1 + 30529 0.66 0.367493
Target:  5'- gGCugAUGGCGGCCGuua-CGUUCGGGUg -3'
miRNA:   3'- gCG--UGCCGCCGGCuggcGCGAGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.