miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18961 5' -58.9 NC_004683.1 + 33930 0.66 0.562179
Target:  5'- --gGCCUGCGGUGG-UCCcgGCgaccGCGCg -3'
miRNA:   3'- gugCGGGCGUCACCuAGG--CGac--UGCG- -5'
18961 5' -58.9 NC_004683.1 + 26928 0.66 0.562179
Target:  5'- uCGCGUcggugaguuccuCCGCAGgcgcgagaGGGUCCGCgcguACGCg -3'
miRNA:   3'- -GUGCG------------GGCGUCa-------CCUAGGCGac--UGCG- -5'
18961 5' -58.9 NC_004683.1 + 40418 0.66 0.562179
Target:  5'- cCGCGCuccaccgagCCGCAGUGuGGgcacCCGCccGugGCa -3'
miRNA:   3'- -GUGCG---------GGCGUCAC-CUa---GGCGa-CugCG- -5'
18961 5' -58.9 NC_004683.1 + 23393 0.66 0.562179
Target:  5'- aACGCCCGCGGcGGcaCCGaCgagGGCGg -3'
miRNA:   3'- gUGCGGGCGUCaCCuaGGC-Ga--CUGCg -5'
18961 5' -58.9 NC_004683.1 + 56680 0.66 0.562179
Target:  5'- cCGCgGCCCGCGGUGGugCUGCcuuugGugGg -3'
miRNA:   3'- -GUG-CGGGCGUCACCuaGGCGa----CugCg -5'
18961 5' -58.9 NC_004683.1 + 46235 0.66 0.555882
Target:  5'- gGCG-CCGCAGUcacGGGaCCGCauguacgugguguucUGGCGCa -3'
miRNA:   3'- gUGCgGGCGUCA---CCUaGGCG---------------ACUGCG- -5'
18961 5' -58.9 NC_004683.1 + 13323 0.66 0.551695
Target:  5'- gACGCCgaUGCGGUcgacGGGUacaCGgUGACGCu -3'
miRNA:   3'- gUGCGG--GCGUCA----CCUAg--GCgACUGCG- -5'
18961 5' -58.9 NC_004683.1 + 5501 0.66 0.551695
Target:  5'- gGCgGCCgUGCAGUGGAgCUGg-GACGCc -3'
miRNA:   3'- gUG-CGG-GCGUCACCUaGGCgaCUGCG- -5'
18961 5' -58.9 NC_004683.1 + 6086 0.66 0.551695
Target:  5'- cCGCGCUCGCcgaGGUGu-UCCaGUUGGCGUc -3'
miRNA:   3'- -GUGCGGGCG---UCACcuAGG-CGACUGCG- -5'
18961 5' -58.9 NC_004683.1 + 17625 0.66 0.55065
Target:  5'- aACGCCuCGaacagucCGGUGauGAaCCGCUGAUGCu -3'
miRNA:   3'- gUGCGG-GC-------GUCAC--CUaGGCGACUGCG- -5'
18961 5' -58.9 NC_004683.1 + 12050 0.66 0.545434
Target:  5'- aGC-CCCGguGUGGGcagcggcgguagccCCGCgcgGGCGCg -3'
miRNA:   3'- gUGcGGGCguCACCUa-------------GGCGa--CUGCG- -5'
18961 5' -58.9 NC_004683.1 + 32563 0.66 0.541272
Target:  5'- gAUGCCCgGCAuacGUGcGGgaCGCUGAUGCa -3'
miRNA:   3'- gUGCGGG-CGU---CAC-CUagGCGACUGCG- -5'
18961 5' -58.9 NC_004683.1 + 35979 0.66 0.541272
Target:  5'- uCACGCCCaacGCGG-GGAccugccgucUCCGCUGuuCGa -3'
miRNA:   3'- -GUGCGGG---CGUCaCCU---------AGGCGACu-GCg -5'
18961 5' -58.9 NC_004683.1 + 21812 0.66 0.541272
Target:  5'- -cUGCCCGCGGgcUGGGUUgaauccggcggCGCUGccaGCGCc -3'
miRNA:   3'- guGCGGGCGUC--ACCUAG-----------GCGAC---UGCG- -5'
18961 5' -58.9 NC_004683.1 + 30506 0.66 0.541272
Target:  5'- gAUGCCga-GGUGGAUgUCGCUGAgGCu -3'
miRNA:   3'- gUGCGGgcgUCACCUA-GGCGACUgCG- -5'
18961 5' -58.9 NC_004683.1 + 24238 0.66 0.541272
Target:  5'- uCACGCacuggcaGCGGUGGGcCCGCgccuACGCc -3'
miRNA:   3'- -GUGCGgg-----CGUCACCUaGGCGac--UGCG- -5'
18961 5' -58.9 NC_004683.1 + 57003 0.66 0.53505
Target:  5'- uGCGUuuCCGCAGgucagaggcucgcgGGGUgCCGCUGcaucgGCGCa -3'
miRNA:   3'- gUGCG--GGCGUCa-------------CCUA-GGCGAC-----UGCG- -5'
18961 5' -58.9 NC_004683.1 + 46328 0.66 0.530915
Target:  5'- -gUGCCCgacguGCGGgcaGGUCCGCgUGAUGCa -3'
miRNA:   3'- guGCGGG-----CGUCac-CUAGGCG-ACUGCG- -5'
18961 5' -58.9 NC_004683.1 + 20199 0.66 0.526792
Target:  5'- aACGaCCgGCGGggucaccucguucGGAU-CGCUGGCGCa -3'
miRNA:   3'- gUGC-GGgCGUCa------------CCUAgGCGACUGCG- -5'
18961 5' -58.9 NC_004683.1 + 34126 0.66 0.524736
Target:  5'- uGgGCCUGCAGcguggcgcgagaaucUGGugugucgCaCGCUGACGCa -3'
miRNA:   3'- gUgCGGGCGUC---------------ACCua-----G-GCGACUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.