miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18962 3' -66.6 NC_004683.1 + 6941 0.66 0.243077
Target:  5'- aGGCGGCCgacuggcggCGGGCgguggugcagcucguCGGCcgGCGGC-CCAGa -3'
miRNA:   3'- -CCGCUGG---------GCCCG---------------GCCG--CGCCGuGGUU- -5'
18962 3' -66.6 NC_004683.1 + 24080 0.66 0.240739
Target:  5'- -cCGGCCgGGGCgGGCGgUGGCguggugaucgcGCCGAg -3'
miRNA:   3'- ccGCUGGgCCCGgCCGC-GCCG-----------UGGUU- -5'
18962 3' -66.6 NC_004683.1 + 32787 0.66 0.234978
Target:  5'- cGCGGgCCa-GCCGGCGCGaGCuGCCAc -3'
miRNA:   3'- cCGCUgGGccCGGCCGCGC-CG-UGGUu -5'
18962 3' -66.6 NC_004683.1 + 20300 0.66 0.234978
Target:  5'- -cCGGCCgGGG-CGGCGaCGGCGgCAGc -3'
miRNA:   3'- ccGCUGGgCCCgGCCGC-GCCGUgGUU- -5'
18962 3' -66.6 NC_004683.1 + 20502 0.66 0.234978
Target:  5'- uGGUGGaggCCGGGCggguaaccaaucCGGCacgaucaccgGCGGCACCGg -3'
miRNA:   3'- -CCGCUg--GGCCCG------------GCCG----------CGCCGUGGUu -5'
18962 3' -66.6 NC_004683.1 + 20035 0.66 0.234978
Target:  5'- cGCGGCcagaCCGGuGauaCGGCGCgguugGGCACCGAc -3'
miRNA:   3'- cCGCUG----GGCC-Cg--GCCGCG-----CCGUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 41395 0.66 0.234978
Target:  5'- cGCcgucaGCCUGGGCgggUGGCGCGGUgagGCCGGg -3'
miRNA:   3'- cCGc----UGGGCCCG---GCCGCGCCG---UGGUU- -5'
18962 3' -66.6 NC_004683.1 + 54800 0.66 0.232706
Target:  5'- gGGCGAUgCCGGcucguuuggcaaaCCGGUauGUGGCACCAGg -3'
miRNA:   3'- -CCGCUG-GGCCc------------GGCCG--CGCCGUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 10494 0.66 0.229332
Target:  5'- cGCGAUgcugCGGGCCGGCuucGCGCCGAg -3'
miRNA:   3'- cCGCUGg---GCCCGGCCGcgcCGUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 12728 0.66 0.229332
Target:  5'- cGcCGACagCGGGCCcaGCaGCGGCGCCGc -3'
miRNA:   3'- cC-GCUGg-GCCCGGc-CG-CGCCGUGGUu -5'
18962 3' -66.6 NC_004683.1 + 861 0.66 0.223802
Target:  5'- aGGaCGGCCCcaccaauGGCguguuccgUGGCGCgGGCACCGAg -3'
miRNA:   3'- -CC-GCUGGGc------CCG--------GCCGCG-CCGUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 7177 0.66 0.223802
Target:  5'- gGGUGcGCCCGGGUgGG-GCGGacuuaagGCCAAg -3'
miRNA:   3'- -CCGC-UGGGCCCGgCCgCGCCg------UGGUU- -5'
18962 3' -66.6 NC_004683.1 + 48886 0.66 0.223802
Target:  5'- aGGUGACCCGGuGagGGUaucaccguGCGGCAgCCAu -3'
miRNA:   3'- -CCGCUGGGCC-CggCCG--------CGCCGU-GGUu -5'
18962 3' -66.6 NC_004683.1 + 34038 0.66 0.223802
Target:  5'- cGCGAgCgGGGaCCGGUGCcGGCcgauCCAGc -3'
miRNA:   3'- cCGCUgGgCCC-GGCCGCG-CCGu---GGUU- -5'
18962 3' -66.6 NC_004683.1 + 22421 0.66 0.223802
Target:  5'- cGGCucGGCCUGG-UCGGCGaCGGCGCg-- -3'
miRNA:   3'- -CCG--CUGGGCCcGGCCGC-GCCGUGguu -5'
18962 3' -66.6 NC_004683.1 + 23819 0.66 0.218385
Target:  5'- -uCGAUCgGGGUCGGCGCcgggguGGUGCCGc -3'
miRNA:   3'- ccGCUGGgCCCGGCCGCG------CCGUGGUu -5'
18962 3' -66.6 NC_004683.1 + 41181 0.66 0.218385
Target:  5'- --aGGCCCcGGCCguggcagcGGCGCGGgGCCGc -3'
miRNA:   3'- ccgCUGGGcCCGG--------CCGCGCCgUGGUu -5'
18962 3' -66.6 NC_004683.1 + 25090 0.66 0.218385
Target:  5'- cGGCaGCUCGGuCuCGGCGCGGaugaACCAc -3'
miRNA:   3'- -CCGcUGGGCCcG-GCCGCGCCg---UGGUu -5'
18962 3' -66.6 NC_004683.1 + 1580 0.66 0.216783
Target:  5'- cGGCGGCCCGcGG-CGGCaacgucgccacauuGCcgGGCAUCAAc -3'
miRNA:   3'- -CCGCUGGGC-CCgGCCG--------------CG--CCGUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 43375 0.66 0.213081
Target:  5'- aGGCGAUCgaagaGGGgCGGCGCcGCAaCCGc -3'
miRNA:   3'- -CCGCUGGg----CCCgGCCGCGcCGU-GGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.