miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18962 5' -54.3 NC_004683.1 + 45219 0.66 0.818327
Target:  5'- cGCUCGccgagaucgucaGCGCCUcuagcgacaGCAaaGGAuCGGGCGg -3'
miRNA:   3'- -CGAGC------------UGCGGA---------UGUggCCUuGUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 19322 0.66 0.818327
Target:  5'- aGCUCGACGC--GCACCGcGuucGACccGGCGg -3'
miRNA:   3'- -CGAGCUGCGgaUGUGGC-C---UUGu-CUGC- -5'
18962 5' -54.3 NC_004683.1 + 12414 0.66 0.818327
Target:  5'- aCUCGACGCUguugcGCGCCGacAGCAccGACGu -3'
miRNA:   3'- cGAGCUGCGGa----UGUGGCc-UUGU--CUGC- -5'
18962 5' -54.3 NC_004683.1 + 56680 0.66 0.818327
Target:  5'- gGCaaGGCGCUgugcuggcggUGCAUCGaGAACGGACu -3'
miRNA:   3'- -CGagCUGCGG----------AUGUGGC-CUUGUCUGc -5'
18962 5' -54.3 NC_004683.1 + 24029 0.66 0.817405
Target:  5'- uGCUCGACGagCUugGCCaGGGugAccggcccGACGa -3'
miRNA:   3'- -CGAGCUGCg-GAugUGG-CCUugU-------CUGC- -5'
18962 5' -54.3 NC_004683.1 + 5686 0.66 0.815557
Target:  5'- aGCUCGAgGCCgUgacccucacgaccgGCACCGGccaGGGCa -3'
miRNA:   3'- -CGAGCUgCGG-A--------------UGUGGCCuugUCUGc -5'
18962 5' -54.3 NC_004683.1 + 23362 0.66 0.809027
Target:  5'- uGCUCG-UGCCggGgACCGGGcuGCGGuCGa -3'
miRNA:   3'- -CGAGCuGCGGa-UgUGGCCU--UGUCuGC- -5'
18962 5' -54.3 NC_004683.1 + 40324 0.66 0.809027
Target:  5'- -aUCGacgcGCGCCUGCAgcUCGGcGCGGGCc -3'
miRNA:   3'- cgAGC----UGCGGAUGU--GGCCuUGUCUGc -5'
18962 5' -54.3 NC_004683.1 + 33949 0.66 0.809027
Target:  5'- gGCUgGAUcgGCCgGCACCGGuccccgcucGCGGugGa -3'
miRNA:   3'- -CGAgCUG--CGGaUGUGGCCu--------UGUCugC- -5'
18962 5' -54.3 NC_004683.1 + 12935 0.66 0.80336
Target:  5'- uGCUCGACgGCCgcccCACCGGuggccggucucugucGaccacaauGCGGACGa -3'
miRNA:   3'- -CGAGCUG-CGGau--GUGGCC---------------U--------UGUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 7168 0.66 0.799545
Target:  5'- cGCUgaGACGggUGCGcCCGGGugGGGCGg -3'
miRNA:   3'- -CGAg-CUGCggAUGU-GGCCUugUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 39608 0.66 0.789891
Target:  5'- uCUgGGCGCCcguuCCGGggUGGGCGc -3'
miRNA:   3'- cGAgCUGCGGauguGGCCuuGUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 25266 0.66 0.780074
Target:  5'- aGCUgGuCGCaCUGCuggccgcgcuGCCGGGccuGCAGGCGc -3'
miRNA:   3'- -CGAgCuGCG-GAUG----------UGGCCU---UGUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 11526 0.67 0.77111
Target:  5'- cGUUCGGCGCCgugcuggaugcccugGCAUCGGucaaGGACc -3'
miRNA:   3'- -CGAGCUGCGGa--------------UGUGGCCuug-UCUGc -5'
18962 5' -54.3 NC_004683.1 + 21431 0.67 0.770107
Target:  5'- --cCGACaGCg-GCGCCGGcGCAGACa -3'
miRNA:   3'- cgaGCUG-CGgaUGUGGCCuUGUCUGc -5'
18962 5' -54.3 NC_004683.1 + 6625 0.67 0.770107
Target:  5'- gGC-CGGCGCCUGuguggUugCGGGcGCGGGCu -3'
miRNA:   3'- -CGaGCUGCGGAU-----GugGCCU-UGUCUGc -5'
18962 5' -54.3 NC_004683.1 + 31462 0.67 0.770107
Target:  5'- uGCUgGccuacCGCC-ACAUCGGAGCGGAaCGu -3'
miRNA:   3'- -CGAgCu----GCGGaUGUGGCCUUGUCU-GC- -5'
18962 5' -54.3 NC_004683.1 + 33843 0.67 0.770107
Target:  5'- aGCUCG-CGCgguCGCCGGGaccaccGCAGGCc -3'
miRNA:   3'- -CGAGCuGCGgauGUGGCCU------UGUCUGc -5'
18962 5' -54.3 NC_004683.1 + 18557 0.67 0.759999
Target:  5'- gGUUCGGCGUCUGCcgcauCCauucggGGAGCGGGuCGg -3'
miRNA:   3'- -CGAGCUGCGGAUGu----GG------CCUUGUCU-GC- -5'
18962 5' -54.3 NC_004683.1 + 21635 0.67 0.759999
Target:  5'- aCUgGGcCGUCUACACCcuGGAGCGcGGCGu -3'
miRNA:   3'- cGAgCU-GCGGAUGUGG--CCUUGU-CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.