miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18963 5' -52.7 NC_004683.1 + 50017 0.66 0.899729
Target:  5'- cGGCGUGCGACGcguucCUCGaccucUGugGUGGc -3'
miRNA:   3'- cCCGUGCGUUGCuu---GAGC-----ACugCACC- -5'
18963 5' -52.7 NC_004683.1 + 33054 0.66 0.899729
Target:  5'- cGGUGCGCAACGuugccgcACUCGUcGACc-GGa -3'
miRNA:   3'- cCCGUGCGUUGCu------UGAGCA-CUGcaCC- -5'
18963 5' -52.7 NC_004683.1 + 15590 0.66 0.892717
Target:  5'- cGGCG-GCAACGcaGACUCGaaGAuCGUGGc -3'
miRNA:   3'- cCCGUgCGUUGC--UUGAGCa-CU-GCACC- -5'
18963 5' -52.7 NC_004683.1 + 32668 0.66 0.892717
Target:  5'- cGGGCAgccuugaagGCAGCGAACaggUCGUcuGGCaGUGGc -3'
miRNA:   3'- -CCCGUg--------CGUUGCUUG---AGCA--CUG-CACC- -5'
18963 5' -52.7 NC_004683.1 + 42348 0.66 0.892717
Target:  5'- aGGcCACGCccuCGAACUCGgGACGc-- -3'
miRNA:   3'- cCC-GUGCGuu-GCUUGAGCaCUGCacc -5'
18963 5' -52.7 NC_004683.1 + 23383 0.66 0.892717
Target:  5'- -cGCGCuGCAGCGGgaugacgauGCUCGUGcCG-GGg -3'
miRNA:   3'- ccCGUG-CGUUGCU---------UGAGCACuGCaCC- -5'
18963 5' -52.7 NC_004683.1 + 32489 0.66 0.8847
Target:  5'- -cGCACGUAugcCGGGCaUCGUgcagccgGACGUGGc -3'
miRNA:   3'- ccCGUGCGUu--GCUUG-AGCA-------CUGCACC- -5'
18963 5' -52.7 NC_004683.1 + 52348 0.66 0.870125
Target:  5'- cGGuGUAgGCGuCGAGCUCGUG-CGccuUGGu -3'
miRNA:   3'- -CC-CGUgCGUuGCUUGAGCACuGC---ACC- -5'
18963 5' -52.7 NC_004683.1 + 42300 0.66 0.870125
Target:  5'- cGGGCGCuguggaucgcgGCGugGGugUucgcCGUGaucGCGUGGg -3'
miRNA:   3'- -CCCGUG-----------CGUugCUugA----GCAC---UGCACC- -5'
18963 5' -52.7 NC_004683.1 + 38996 0.66 0.870125
Target:  5'- cGGGUACGUGACuaccuGCUCGaGACGgaguccgGGu -3'
miRNA:   3'- -CCCGUGCGUUGcu---UGAGCaCUGCa------CC- -5'
18963 5' -52.7 NC_004683.1 + 6671 0.66 0.870125
Target:  5'- uGGC-CGCGGCGcgccGCUgGUGugGcUGGc -3'
miRNA:   3'- cCCGuGCGUUGCu---UGAgCACugC-ACC- -5'
18963 5' -52.7 NC_004683.1 + 1210 0.66 0.865336
Target:  5'- cGGcCGCGCuuGACGAGCUUgugcagcaccucggaGUcGGCGUGGc -3'
miRNA:   3'- cCC-GUGCG--UUGCUUGAG---------------CA-CUGCACC- -5'
18963 5' -52.7 NC_004683.1 + 10418 0.67 0.857161
Target:  5'- cGGCGCGCuuuGCGAcagcgguggcagaacGCUCGUcGAgCGUcGGu -3'
miRNA:   3'- cCCGUGCGu--UGCU---------------UGAGCA-CU-GCA-CC- -5'
18963 5' -52.7 NC_004683.1 + 52039 0.67 0.853826
Target:  5'- aGGCGCGuCAGCGGAUccacugCG-GGCGUGc -3'
miRNA:   3'- cCCGUGC-GUUGCUUGa-----GCaCUGCACc -5'
18963 5' -52.7 NC_004683.1 + 47572 0.67 0.845326
Target:  5'- gGGGCGuccccUGCGACG-GCUgCGUGGCGgcguucGGg -3'
miRNA:   3'- -CCCGU-----GCGUUGCuUGA-GCACUGCa-----CC- -5'
18963 5' -52.7 NC_004683.1 + 31296 0.67 0.845326
Target:  5'- gGGGUuguGCAgcuGCGGGC-CGUGGCgGUGGc -3'
miRNA:   3'- -CCCGug-CGU---UGCUUGaGCACUG-CACC- -5'
18963 5' -52.7 NC_004683.1 + 46127 0.67 0.8436
Target:  5'- gGGGCACGUcccaca-UCGUGGCGcGGg -3'
miRNA:   3'- -CCCGUGCGuugcuugAGCACUGCaCC- -5'
18963 5' -52.7 NC_004683.1 + 12314 0.67 0.841864
Target:  5'- cGGCACGC--CGGGCgcucccgccccggCG-GGCGUGGg -3'
miRNA:   3'- cCCGUGCGuuGCUUGa------------GCaCUGCACC- -5'
18963 5' -52.7 NC_004683.1 + 52248 0.67 0.827668
Target:  5'- cGGCagaucGCGCAACGugucacgcAGCUgCGUGAUGUGc -3'
miRNA:   3'- cCCG-----UGCGUUGC--------UUGA-GCACUGCACc -5'
18963 5' -52.7 NC_004683.1 + 24043 0.67 0.826764
Target:  5'- gGGGCACGUAGCcguGCUCGacgagcuUGGCcaGGg -3'
miRNA:   3'- -CCCGUGCGUUGcu-UGAGC-------ACUGcaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.