miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18968 3' -53.5 NC_004683.1 + 47282 0.66 0.859136
Target:  5'- cGCgCGGCCGGugGGgugaccgcgUUGCCGGCcuggCGc -3'
miRNA:   3'- -CG-GCUGGCCugCU---------AGCGGUUGuaa-GC- -5'
18968 3' -53.5 NC_004683.1 + 52591 0.66 0.859136
Target:  5'- cGUCGGCC--GCGAUCGCCuGCAc--- -3'
miRNA:   3'- -CGGCUGGccUGCUAGCGGuUGUaagc -5'
18968 3' -53.5 NC_004683.1 + 8983 0.66 0.859136
Target:  5'- aGCCaGCCGGuCGA-CGCCGAgAagaUCGg -3'
miRNA:   3'- -CGGcUGGCCuGCUaGCGGUUgUa--AGC- -5'
18968 3' -53.5 NC_004683.1 + 33707 0.66 0.859136
Target:  5'- cGUCGACCGGAuCGGU-GUCAGCcccgugCGg -3'
miRNA:   3'- -CGGCUGGCCU-GCUAgCGGUUGuaa---GC- -5'
18968 3' -53.5 NC_004683.1 + 3713 0.66 0.859136
Target:  5'- uGCCGGCgaGGACGGUgaGCCAAacgaCGg -3'
miRNA:   3'- -CGGCUGg-CCUGCUAg-CGGUUguaaGC- -5'
18968 3' -53.5 NC_004683.1 + 34885 0.66 0.859136
Target:  5'- cCUGGCCGcGACGAgaugCGCCuggaaccccuuGCAUUUGc -3'
miRNA:   3'- cGGCUGGC-CUGCUa---GCGGu----------UGUAAGC- -5'
18968 3' -53.5 NC_004683.1 + 43598 0.66 0.850807
Target:  5'- aGCUGuCgGuGACGAcgUCGCCGACggUCu -3'
miRNA:   3'- -CGGCuGgC-CUGCU--AGCGGUUGuaAGc -5'
18968 3' -53.5 NC_004683.1 + 2951 0.66 0.850807
Target:  5'- uGCCGACCaGGCGAUgaGCaAGCAUcaggCGa -3'
miRNA:   3'- -CGGCUGGcCUGCUAg-CGgUUGUAa---GC- -5'
18968 3' -53.5 NC_004683.1 + 49290 0.66 0.850807
Target:  5'- gGCCGAUCGGgauagggcGCGGguuaGCCAGCAc--- -3'
miRNA:   3'- -CGGCUGGCC--------UGCUag--CGGUUGUaagc -5'
18968 3' -53.5 NC_004683.1 + 21414 0.66 0.850807
Target:  5'- uCCGAUCgGGAUGGUCaCCGACAgcggCGc -3'
miRNA:   3'- cGGCUGG-CCUGCUAGcGGUUGUaa--GC- -5'
18968 3' -53.5 NC_004683.1 + 48562 0.66 0.850807
Target:  5'- gGCUGcACUGGGUGAUCGUCGGCGgcgagagCGg -3'
miRNA:   3'- -CGGC-UGGCCUGCUAGCGGUUGUaa-----GC- -5'
18968 3' -53.5 NC_004683.1 + 18568 0.66 0.842251
Target:  5'- uGCCGAcaCCGGGCGAccUGCUGcUGUUCGu -3'
miRNA:   3'- -CGGCU--GGCCUGCUa-GCGGUuGUAAGC- -5'
18968 3' -53.5 NC_004683.1 + 24926 0.66 0.842251
Target:  5'- uGCCGaACUGGAUGA-CGCCGuugaGCcggUCGc -3'
miRNA:   3'- -CGGC-UGGCCUGCUaGCGGU----UGua-AGC- -5'
18968 3' -53.5 NC_004683.1 + 21077 0.66 0.842251
Target:  5'- cGCUG-CgGGACGGUCGgCGACGg--- -3'
miRNA:   3'- -CGGCuGgCCUGCUAGCgGUUGUaagc -5'
18968 3' -53.5 NC_004683.1 + 28605 0.66 0.842251
Target:  5'- aCCGGCUGGAaguCGA-CGCCGAagGUUUGg -3'
miRNA:   3'- cGGCUGGCCU---GCUaGCGGUUg-UAAGC- -5'
18968 3' -53.5 NC_004683.1 + 33032 0.66 0.833477
Target:  5'- cGUCGACCGGAuCGAg-GCCAAUc---- -3'
miRNA:   3'- -CGGCUGGCCU-GCUagCGGUUGuaagc -5'
18968 3' -53.5 NC_004683.1 + 4541 0.66 0.833477
Target:  5'- uCCGAgCgGGugGAUCGCUGcGCGUcgUCGg -3'
miRNA:   3'- cGGCU-GgCCugCUAGCGGU-UGUA--AGC- -5'
18968 3' -53.5 NC_004683.1 + 31895 0.66 0.833477
Target:  5'- cGUCGGCuCGGGcCGGUgcaGCCAGCGgggCGa -3'
miRNA:   3'- -CGGCUG-GCCU-GCUAg--CGGUUGUaa-GC- -5'
18968 3' -53.5 NC_004683.1 + 33665 0.66 0.833477
Target:  5'- uGCCGACCug--GGUCGCCcaccagucGCGUUCGa -3'
miRNA:   3'- -CGGCUGGccugCUAGCGGu-------UGUAAGC- -5'
18968 3' -53.5 NC_004683.1 + 20313 0.66 0.833477
Target:  5'- cGCCGAuacCCGGcacCGAcugCGCCAGCGaUCc -3'
miRNA:   3'- -CGGCU---GGCCu--GCUa--GCGGUUGUaAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.