miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18968 5' -51.3 NC_004683.1 + 2407 0.66 0.945571
Target:  5'- gUUGAACGCgAAC-UCGUUcagcaucugggcguaGUCGUCGa -3'
miRNA:   3'- gGGCUUGCGgUUGuAGCAG---------------UAGCAGC- -5'
18968 5' -51.3 NC_004683.1 + 31505 0.66 0.943645
Target:  5'- gCCUGGgaccaggcguAgGCCGACAUggUGUCggCGUCGg -3'
miRNA:   3'- -GGGCU----------UgCGGUUGUA--GCAGuaGCAGC- -5'
18968 5' -51.3 NC_004683.1 + 52058 0.66 0.943645
Target:  5'- gCCCGAcGCGCCcuGGCugAUCGUCGaCG-CGg -3'
miRNA:   3'- -GGGCU-UGCGG--UUG--UAGCAGUaGCaGC- -5'
18968 5' -51.3 NC_004683.1 + 24336 0.66 0.943645
Target:  5'- aCCCGcgagaugcAACGCCGAC-UCGUCGcCG-Ca -3'
miRNA:   3'- -GGGC--------UUGCGGUUGuAGCAGUaGCaGc -5'
18968 5' -51.3 NC_004683.1 + 3784 0.66 0.943645
Target:  5'- aCCGuccuCGCCGGCAUCGcgCAaCGUg- -3'
miRNA:   3'- gGGCuu--GCGGUUGUAGCa-GUaGCAgc -5'
18968 5' -51.3 NC_004683.1 + 40152 0.66 0.943645
Target:  5'- gCCCGGGCGaaCAGCG-CGUCGacgCGUUGc -3'
miRNA:   3'- -GGGCUUGCg-GUUGUaGCAGUa--GCAGC- -5'
18968 5' -51.3 NC_004683.1 + 40370 0.66 0.938637
Target:  5'- cCUCGGcgAUGCCAGCG-CG-CAguUCGUCGa -3'
miRNA:   3'- -GGGCU--UGCGGUUGUaGCaGU--AGCAGC- -5'
18968 5' -51.3 NC_004683.1 + 6881 0.66 0.938637
Target:  5'- gCUGGacgGCGCgCGACGgcgCGaUCGUCGUCa -3'
miRNA:   3'- gGGCU---UGCG-GUUGUa--GC-AGUAGCAGc -5'
18968 5' -51.3 NC_004683.1 + 53591 0.66 0.938637
Target:  5'- gCCGcacCGCCGGCcgCGUCuUCGcCGc -3'
miRNA:   3'- gGGCuu-GCGGUUGuaGCAGuAGCaGC- -5'
18968 5' -51.3 NC_004683.1 + 55024 0.66 0.937081
Target:  5'- gCCgCGGGCGCCGgugagagcgaagugGCGacCGUCGUCGUa- -3'
miRNA:   3'- -GG-GCUUGCGGU--------------UGUa-GCAGUAGCAgc -5'
18968 5' -51.3 NC_004683.1 + 44371 0.66 0.9355
Target:  5'- gCCCGGGCGaUCGucggcgcggaucgccGCGUCGagccgCGUCGUCu -3'
miRNA:   3'- -GGGCUUGC-GGU---------------UGUAGCa----GUAGCAGc -5'
18968 5' -51.3 NC_004683.1 + 49357 0.66 0.933353
Target:  5'- uCCaCGugUGCCGcgACGUCGUCGggcagCGUCc -3'
miRNA:   3'- -GG-GCuuGCGGU--UGUAGCAGUa----GCAGc -5'
18968 5' -51.3 NC_004683.1 + 53215 0.66 0.933353
Target:  5'- --gGGGCGCgAACGUCGaCAUgGUCa -3'
miRNA:   3'- gggCUUGCGgUUGUAGCaGUAgCAGc -5'
18968 5' -51.3 NC_004683.1 + 30486 0.66 0.933353
Target:  5'- gCCuuGCGCCAcCAUCGUCuguUCGg-- -3'
miRNA:   3'- gGGcuUGCGGUuGUAGCAGu--AGCagc -5'
18968 5' -51.3 NC_004683.1 + 4834 0.66 0.92779
Target:  5'- aUCCGGGCGUgGACcUCGUCGgccCGguugCGg -3'
miRNA:   3'- -GGGCUUGCGgUUGuAGCAGUa--GCa---GC- -5'
18968 5' -51.3 NC_004683.1 + 30079 0.66 0.92779
Target:  5'- gCCGGACGCCAAU-UCGgacuUCGagCGUCu -3'
miRNA:   3'- gGGCUUGCGGUUGuAGC----AGUa-GCAGc -5'
18968 5' -51.3 NC_004683.1 + 6806 0.66 0.92779
Target:  5'- gCCCGGGcCGUCGACuuccaugaCGUCAUCGa-- -3'
miRNA:   3'- -GGGCUU-GCGGUUGua------GCAGUAGCagc -5'
18968 5' -51.3 NC_004683.1 + 5229 0.66 0.921949
Target:  5'- gCCCGucagUGCCuGGCGaCGUCGUCGcCGg -3'
miRNA:   3'- -GGGCuu--GCGG-UUGUaGCAGUAGCaGC- -5'
18968 5' -51.3 NC_004683.1 + 3910 0.66 0.921949
Target:  5'- uCCCGAuCGCCAGCcugCGcagCAUCGcUGa -3'
miRNA:   3'- -GGGCUuGCGGUUGua-GCa--GUAGCaGC- -5'
18968 5' -51.3 NC_004683.1 + 48534 0.66 0.921949
Target:  5'- gUCCu--CGCCGGCAcCGUCAcaaaCGUCGg -3'
miRNA:   3'- -GGGcuuGCGGUUGUaGCAGUa---GCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.