miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18970 3' -55.5 NC_004683.1 + 33853 0.66 0.742908
Target:  5'- gGCuACCCuCGACCCGCucgaaGUGGCAg- -3'
miRNA:   3'- -UGuUGGG-GCUGGGCGuug--CGUUGUgg -5'
18970 3' -55.5 NC_004683.1 + 23997 0.66 0.742908
Target:  5'- gACGAUgCCGucggccGCCaCGCcuACGCGGCGCUg -3'
miRNA:   3'- -UGUUGgGGC------UGG-GCGu-UGCGUUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 4392 0.66 0.742908
Target:  5'- uACGGCCUCGGCgaGCAACuu-GCGCUg -3'
miRNA:   3'- -UGUUGGGGCUGggCGUUGcguUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 25358 0.66 0.742908
Target:  5'- uGCAGgCCCGGCagCGCGGCcaGCAguGCgACCa -3'
miRNA:   3'- -UGUUgGGGCUGg-GCGUUG--CGU--UG-UGG- -5'
18970 3' -55.5 NC_004683.1 + 25947 0.66 0.742908
Target:  5'- uCGACgCCGAgCCGCAGC-CA--GCCg -3'
miRNA:   3'- uGUUGgGGCUgGGCGUUGcGUugUGG- -5'
18970 3' -55.5 NC_004683.1 + 5692 0.66 0.742907
Target:  5'- -aGGCCgUGACCCucaCGAC-CGGCACCg -3'
miRNA:   3'- ugUUGGgGCUGGGc--GUUGcGUUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 21525 0.66 0.742907
Target:  5'- cACGAUCCCGGUCUGguGcCGCuACAUCg -3'
miRNA:   3'- -UGUUGGGGCUGGGCguU-GCGuUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 6123 0.66 0.741871
Target:  5'- cCAACCgCCGGCCCaacggGUcGCGCGGCugguucgcguacuACCg -3'
miRNA:   3'- uGUUGG-GGCUGGG-----CGuUGCGUUG-------------UGG- -5'
18970 3' -55.5 NC_004683.1 + 36378 0.66 0.739795
Target:  5'- cCAACCCCcuACCCGCGACaggaCGgauuucggucgaucGCGCCc -3'
miRNA:   3'- uGUUGGGGc-UGGGCGUUGc---GU--------------UGUGG- -5'
18970 3' -55.5 NC_004683.1 + 16413 0.66 0.732495
Target:  5'- uCGAUCCUGACCgCGaucgAGCGCGACGg- -3'
miRNA:   3'- uGUUGGGGCUGG-GCg---UUGCGUUGUgg -5'
18970 3' -55.5 NC_004683.1 + 23696 0.66 0.732495
Target:  5'- gACGGguUCUCGACguuCCGCcGCGgCGGCACCg -3'
miRNA:   3'- -UGUU--GGGGCUG---GGCGuUGC-GUUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 30754 0.66 0.731448
Target:  5'- gACGGCCgCUGucgaCCGCAccgGCGCAccgucggcugcgcACGCCg -3'
miRNA:   3'- -UGUUGG-GGCug--GGCGU---UGCGU-------------UGUGG- -5'
18970 3' -55.5 NC_004683.1 + 41905 0.66 0.721985
Target:  5'- gGCAccGCCUCaACCUGCuGgGCAcGCACCa -3'
miRNA:   3'- -UGU--UGGGGcUGGGCGuUgCGU-UGUGG- -5'
18970 3' -55.5 NC_004683.1 + 50778 0.66 0.721985
Target:  5'- gACGgguGCCgUCGACCuCGUAGCGCcACAgCa -3'
miRNA:   3'- -UGU---UGG-GGCUGG-GCGUUGCGuUGUgG- -5'
18970 3' -55.5 NC_004683.1 + 31618 0.66 0.721985
Target:  5'- cCGAgCUCG-CCgGCGugGCcGACGCCg -3'
miRNA:   3'- uGUUgGGGCuGGgCGUugCG-UUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 13081 0.66 0.721985
Target:  5'- cCGGCgCCCGGCaggaagCCGCGcucGCGCAGcCACUc -3'
miRNA:   3'- uGUUG-GGGCUG------GGCGU---UGCGUU-GUGG- -5'
18970 3' -55.5 NC_004683.1 + 51831 0.66 0.721985
Target:  5'- gGCGAaguaCUCGGCgaggGCGGCGCGGCACUg -3'
miRNA:   3'- -UGUUg---GGGCUGgg--CGUUGCGUUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 45903 0.66 0.721984
Target:  5'- -uGACCCCG-CCgGUuccCGC-GCACCg -3'
miRNA:   3'- ugUUGGGGCuGGgCGuu-GCGuUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 12198 0.66 0.721984
Target:  5'- uGCGAUCCCGGuuCCUGguGCGauucccACGCCc -3'
miRNA:   3'- -UGUUGGGGCU--GGGCguUGCgu----UGUGG- -5'
18970 3' -55.5 NC_004683.1 + 4095 0.66 0.721984
Target:  5'- ---cCCCCGACggcaagaucauCCGCGACgaGCAGCAgCu -3'
miRNA:   3'- uguuGGGGCUG-----------GGCGUUG--CGUUGUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.