miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18973 3' -58.1 NC_004683.1 + 8845 0.66 0.598158
Target:  5'- uGCUCGGccGCGAcgaggGGCCGuuGCCcucaccgaACgCGCCg -3'
miRNA:   3'- -UGAGCCaaCGCU-----CCGGU--UGG--------UG-GCGG- -5'
18973 3' -58.1 NC_004683.1 + 34940 0.66 0.598158
Target:  5'- -aUCcGUUGCGAcGGCCu-CgGCCGUCa -3'
miRNA:   3'- ugAGcCAACGCU-CCGGuuGgUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 51665 0.66 0.598158
Target:  5'- -gUUGGUgGCcAGGUCAgaaACCGCaCGCCg -3'
miRNA:   3'- ugAGCCAaCGcUCCGGU---UGGUG-GCGG- -5'
18973 3' -58.1 NC_004683.1 + 24787 0.66 0.598158
Target:  5'- gGCguugCGGUcGCGGcGGCgcgCGGCCAUgGCCu -3'
miRNA:   3'- -UGa---GCCAaCGCU-CCG---GUUGGUGgCGG- -5'
18973 3' -58.1 NC_004683.1 + 7439 0.66 0.598158
Target:  5'- uGCUCGGUgccGuCGuAGaCCAACuCACCGUCc -3'
miRNA:   3'- -UGAGCCAa--C-GC-UCcGGUUG-GUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 20518 0.66 0.598158
Target:  5'- -aUCGGc-GCGGuGGCCccugCACCGCCg -3'
miRNA:   3'- ugAGCCaaCGCU-CCGGuug-GUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 44568 0.66 0.587458
Target:  5'- gAUUCGGccgGCGucaaaGCCAcGCgCGCCGCCg -3'
miRNA:   3'- -UGAGCCaa-CGCuc---CGGU-UG-GUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 24420 0.66 0.576793
Target:  5'- -gUCGGcuacgGCGGGaccaagccGCCGGCCACCgagcGCCg -3'
miRNA:   3'- ugAGCCaa---CGCUC--------CGGUUGGUGG----CGG- -5'
18973 3' -58.1 NC_004683.1 + 24238 0.66 0.576793
Target:  5'- gACgCGGccUUGUGcAGGUCGGCgAUCGCCu -3'
miRNA:   3'- -UGaGCC--AACGC-UCCGGUUGgUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 20355 0.66 0.576793
Target:  5'- gUUUGGaUGCuGAGGCCAggaauccgacGCCGuuGCUg -3'
miRNA:   3'- uGAGCCaACG-CUCCGGU----------UGGUggCGG- -5'
18973 3' -58.1 NC_004683.1 + 3383 0.66 0.576793
Target:  5'- gUUCGGUUGUGGuacgacGCCGACgACgUGCCg -3'
miRNA:   3'- uGAGCCAACGCUc-----CGGUUGgUG-GCGG- -5'
18973 3' -58.1 NC_004683.1 + 7816 0.66 0.573601
Target:  5'- aACUCGacgaagUGCGcauaccaggcuuucGGGCCGaacacGCCACgGCCg -3'
miRNA:   3'- -UGAGCca----ACGC--------------UCCGGU-----UGGUGgCGG- -5'
18973 3' -58.1 NC_004683.1 + 46379 0.66 0.566171
Target:  5'- --gCGGgccccGUGGGGCC-GCUACCGCg -3'
miRNA:   3'- ugaGCCaa---CGCUCCGGuUGGUGGCGg -5'
18973 3' -58.1 NC_004683.1 + 9468 0.66 0.566171
Target:  5'- cCUCGGcgacgGCGAGGCguGggaGCUGCCg -3'
miRNA:   3'- uGAGCCaa---CGCUCCGguUgg-UGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 40799 0.66 0.565112
Target:  5'- cGCUCGccgacgGCGAGGCCGAgUGCgaggugcacgaggCGCCa -3'
miRNA:   3'- -UGAGCcaa---CGCUCCGGUUgGUG-------------GCGG- -5'
18973 3' -58.1 NC_004683.1 + 51275 0.66 0.565112
Target:  5'- cGCUCGcGcucgUGCGGGGCgcguucuCGGCgGCgCGCCg -3'
miRNA:   3'- -UGAGC-Ca---ACGCUCCG-------GUUGgUG-GCGG- -5'
18973 3' -58.1 NC_004683.1 + 10423 0.66 0.555601
Target:  5'- -aUgGGgcGCGGGauGCCGACCagGCCGUCa -3'
miRNA:   3'- ugAgCCaaCGCUC--CGGUUGG--UGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 4220 0.66 0.555601
Target:  5'- -aUCGGgccggUGaCGuGGCCGGCCuaCGCCg -3'
miRNA:   3'- ugAGCCa----AC-GCuCCGGUUGGugGCGG- -5'
18973 3' -58.1 NC_004683.1 + 21703 0.66 0.555601
Target:  5'- -gUCGG-UGCGGGuggcGCUGGCagCGCCGCCg -3'
miRNA:   3'- ugAGCCaACGCUC----CGGUUG--GUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 41258 0.66 0.555601
Target:  5'- gACU-GGcUGUGGGcGCCcgugcugaucGCCGCCGCCa -3'
miRNA:   3'- -UGAgCCaACGCUC-CGGu---------UGGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.