miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18974 5' -59.2 NC_004683.1 + 18117 0.66 0.503482
Target:  5'- gAUCGCgGuCGCCgCCgGCACcuACcGCACGCc -3'
miRNA:   3'- -UAGUGaC-GCGG-GG-CGUG--UGaCGUGCG- -5'
18974 5' -59.2 NC_004683.1 + 35477 0.66 0.502457
Target:  5'- -aCGCcgaaUGCG-CUCGCACGCUGUcugcgaaGCGCa -3'
miRNA:   3'- uaGUG----ACGCgGGGCGUGUGACG-------UGCG- -5'
18974 5' -59.2 NC_004683.1 + 43566 0.66 0.493281
Target:  5'- gGUCGCgGCaGCCCC-CACGaggGCAgGCu -3'
miRNA:   3'- -UAGUGaCG-CGGGGcGUGUga-CGUgCG- -5'
18974 5' -59.2 NC_004683.1 + 46305 0.66 0.493281
Target:  5'- cGUgACUGCGgcgcCCCCGgACcgaacgcCUGCGCGUg -3'
miRNA:   3'- -UAgUGACGC----GGGGCgUGu------GACGUGCG- -5'
18974 5' -59.2 NC_004683.1 + 40942 0.66 0.493281
Target:  5'- aGUCGCUGCccguacucGCCCgcgaUGCACACUcgGCACu- -3'
miRNA:   3'- -UAGUGACG--------CGGG----GCGUGUGA--CGUGcg -5'
18974 5' -59.2 NC_004683.1 + 8560 0.66 0.493281
Target:  5'- gAUCGCcgugGCGUUCCGCgacGCACUcgGUACGUc -3'
miRNA:   3'- -UAGUGa---CGCGGGGCG---UGUGA--CGUGCG- -5'
18974 5' -59.2 NC_004683.1 + 25240 0.66 0.493281
Target:  5'- -gCGCgGCGUgcugaccaacauCCCGCagcuggucGCACUGCugGCc -3'
miRNA:   3'- uaGUGaCGCG------------GGGCG--------UGUGACGugCG- -5'
18974 5' -59.2 NC_004683.1 + 17978 0.66 0.487206
Target:  5'- -cCACUGCGCUgUGUggcguugagcugaacGCGCUGCgGCGUc -3'
miRNA:   3'- uaGUGACGCGGgGCG---------------UGUGACG-UGCG- -5'
18974 5' -59.2 NC_004683.1 + 50386 0.66 0.483177
Target:  5'- gGUCGCUcaugaaGCGuCCCCGaACAgaGUugGCg -3'
miRNA:   3'- -UAGUGA------CGC-GGGGCgUGUgaCGugCG- -5'
18974 5' -59.2 NC_004683.1 + 32229 0.66 0.482171
Target:  5'- --aGCUGCGCaaaCCGUuuggggguauucgGCGCUGUuCGCg -3'
miRNA:   3'- uagUGACGCGg--GGCG-------------UGUGACGuGCG- -5'
18974 5' -59.2 NC_004683.1 + 30462 0.66 0.482171
Target:  5'- gGUUACUGCGCCUagaugauCugGCUGCcaagcuucuaccaACGCg -3'
miRNA:   3'- -UAGUGACGCGGGgc-----GugUGACG-------------UGCG- -5'
18974 5' -59.2 NC_004683.1 + 52139 0.66 0.473173
Target:  5'- uUC-CUGUGCCUgaCGCACAU--CACGCa -3'
miRNA:   3'- uAGuGACGCGGG--GCGUGUGacGUGCG- -5'
18974 5' -59.2 NC_004683.1 + 5116 0.66 0.470192
Target:  5'- --aGCUGCGUgCCCGgGCGCUGUcggccaucgagaagAUGCa -3'
miRNA:   3'- uagUGACGCG-GGGCgUGUGACG--------------UGCG- -5'
18974 5' -59.2 NC_004683.1 + 52231 0.66 0.459345
Target:  5'- uGUCACgcagcugcgugaugUGCGUCagGCACaggaacaGCUGCGCGCg -3'
miRNA:   3'- -UAGUG--------------ACGCGGggCGUG-------UGACGUGCG- -5'
18974 5' -59.2 NC_004683.1 + 4529 0.66 0.457387
Target:  5'- gAUCGCUGCGCgUCGUcggACucggccggguguucaACUGCGgGCg -3'
miRNA:   3'- -UAGUGACGCGgGGCG---UG---------------UGACGUgCG- -5'
18974 5' -59.2 NC_004683.1 + 40192 0.66 0.453485
Target:  5'- gGUCGCggccGCGUCCgGCugGuCUGUcaagGCGCg -3'
miRNA:   3'- -UAGUGa---CGCGGGgCGugU-GACG----UGCG- -5'
18974 5' -59.2 NC_004683.1 + 43779 0.66 0.453485
Target:  5'- cAUCGCUaaGCaGUCCCuCgACgACUGCACGCa -3'
miRNA:   3'- -UAGUGA--CG-CGGGGcG-UG-UGACGUGCG- -5'
18974 5' -59.2 NC_004683.1 + 43785 0.66 0.45057
Target:  5'- -gCGCgaUGCGgucgggguccauacCCuuGgGCACUGCACGCg -3'
miRNA:   3'- uaGUG--ACGC--------------GGggCgUGUGACGUGCG- -5'
18974 5' -59.2 NC_004683.1 + 5589 0.67 0.443809
Target:  5'- --aACUcgGCGUCCCaGCucCACUGCACGg -3'
miRNA:   3'- uagUGA--CGCGGGG-CGu-GUGACGUGCg -5'
18974 5' -59.2 NC_004683.1 + 26018 0.67 0.435201
Target:  5'- uUC-CUGCGCucgacgcagauCCUGCACACcaugcaccgguuccgGCGCGCg -3'
miRNA:   3'- uAGuGACGCG-----------GGGCGUGUGa--------------CGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.