miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18977 3' -63.3 NC_004684.1 + 16002 0.68 0.288862
Target:  5'- gGUGCCGGguaGGCCuCUGCCgggaCGCCCu -3'
miRNA:   3'- gCAUGGCCa--UCGGcGGCGGg---GUGGGc -5'
18977 3' -63.3 NC_004684.1 + 40210 0.68 0.282201
Target:  5'- gGUGCCGa-GGCCGCCaGCgCCCGCUaCGg -3'
miRNA:   3'- gCAUGGCcaUCGGCGG-CG-GGGUGG-GC- -5'
18977 3' -63.3 NC_004684.1 + 66747 0.71 0.195985
Target:  5'- --cGCCGGUgaccgGGCCGCCGCCgaggccaucguggCCACCa- -3'
miRNA:   3'- gcaUGGCCA-----UCGGCGGCGG-------------GGUGGgc -5'
18977 3' -63.3 NC_004684.1 + 1132 0.74 0.117751
Target:  5'- --aACCGGU-GCCGCCauuucugGCCCCACgCCGc -3'
miRNA:   3'- gcaUGGCCAuCGGCGG-------CGGGGUG-GGC- -5'
18977 3' -63.3 NC_004684.1 + 66590 0.68 0.316736
Target:  5'- gCGgcCCGcGaGGCCGCCGCCaaggccuagccgCCACCgGg -3'
miRNA:   3'- -GCauGGC-CaUCGGCGGCGG------------GGUGGgC- -5'
18977 3' -63.3 NC_004684.1 + 26455 0.68 0.301856
Target:  5'- aCGuUGCCGGU-GCCGuuGCCCgACggaauggCCGa -3'
miRNA:   3'- -GC-AUGGCCAuCGGCggCGGGgUG-------GGC- -5'
18977 3' -63.3 NC_004684.1 + 33617 0.69 0.269246
Target:  5'- gGUGCCGuacgaccccGCauaGCCGCCaCCGCCCGc -3'
miRNA:   3'- gCAUGGCcau------CGg--CGGCGG-GGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 34248 0.75 0.106348
Target:  5'- gCGUGCCGGUgAGCagcaCCGUgCCGCCCGa -3'
miRNA:   3'- -GCAUGGCCA-UCGgc--GGCGgGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 29302 0.68 0.295645
Target:  5'- uGUcCUGGccGuuGCCGUCCCACaCCGa -3'
miRNA:   3'- gCAuGGCCauCggCGGCGGGGUG-GGC- -5'
18977 3' -63.3 NC_004684.1 + 39543 0.75 0.093245
Target:  5'- aCGaGCCaGGUAGCCGCaCGCCUCgGCCUGg -3'
miRNA:   3'- -GCaUGG-CCAUCGGCG-GCGGGG-UGGGC- -5'
18977 3' -63.3 NC_004684.1 + 18544 0.68 0.282201
Target:  5'- --aGCuCGGU-GCCGUCGUCCUGCUCGg -3'
miRNA:   3'- gcaUG-GCCAuCGGCGGCGGGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 53782 0.68 0.288862
Target:  5'- -cUACCGGUcGGCCaaccagguguuCCGgCCCACCCGu -3'
miRNA:   3'- gcAUGGCCA-UCGGc----------GGCgGGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 19609 0.69 0.238385
Target:  5'- --aGCUGGcguugAGCCagugcguGCCGUCCCACCCa -3'
miRNA:   3'- gcaUGGCCa----UCGG-------CGGCGGGGUGGGc -5'
18977 3' -63.3 NC_004684.1 + 47057 0.7 0.211575
Target:  5'- gGUACUGGUGGCaGCCGCUgCGuugcaucauCCCGa -3'
miRNA:   3'- gCAUGGCCAUCGgCGGCGGgGU---------GGGC- -5'
18977 3' -63.3 NC_004684.1 + 59988 0.72 0.173392
Target:  5'- --gGCCGGUucgugcGCCGCCGCaucgggguggaCCUGCCCGg -3'
miRNA:   3'- gcaUGGCCAu-----CGGCGGCG-----------GGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 5996 0.74 0.121167
Target:  5'- --aGCCGGUcgugcgcgaucAG-CGCCGCCgCCACCCGg -3'
miRNA:   3'- gcaUGGCCA-----------UCgGCGGCGG-GGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 4982 0.67 0.324014
Target:  5'- --gGCCGGUGGCgaccagGCCGCCUgAgCCGc -3'
miRNA:   3'- gcaUGGCCAUCGg-----CGGCGGGgUgGGC- -5'
18977 3' -63.3 NC_004684.1 + 58263 0.67 0.324014
Target:  5'- gGUGCUGGUGGCgGCacaGUCgCACCgGc -3'
miRNA:   3'- gCAUGGCCAUCGgCGg--CGGgGUGGgC- -5'
18977 3' -63.3 NC_004684.1 + 48151 0.68 0.309582
Target:  5'- --aACCGGUGGUCGaaaCCGCCauccgcaugcgCCGCCUGa -3'
miRNA:   3'- gcaUGGCCAUCGGC---GGCGG-----------GGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 15783 0.68 0.302552
Target:  5'- aCGaUGCCGGUGGCgucggUGCCGCCgCUGgCCa -3'
miRNA:   3'- -GC-AUGGCCAUCG-----GCGGCGG-GGUgGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.