miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18979 5' -54.9 NC_004684.1 + 59695 0.66 0.816019
Target:  5'- gUCGAGCAuugguGCgCGGGauguGACCGGGuGGUGCg -3'
miRNA:   3'- -GGCUUGU-----CGaGCCU----UUGGCCC-UCGUG- -5'
18979 5' -54.9 NC_004684.1 + 49705 0.66 0.816019
Target:  5'- aCCGGGCAcgcGCUCGGcgGCgCGGcGuucaaacucagcGGCACg -3'
miRNA:   3'- -GGCUUGU---CGAGCCuuUG-GCC-C------------UCGUG- -5'
18979 5' -54.9 NC_004684.1 + 13121 0.66 0.816019
Target:  5'- gCCGAcCGGCcCGGcgacguAACCGGGcGCGu -3'
miRNA:   3'- -GGCUuGUCGaGCCu-----UUGGCCCuCGUg -5'
18979 5' -54.9 NC_004684.1 + 44616 0.66 0.806764
Target:  5'- aCCGGAC-GCg-GGAGcGCCGGGGGgaGCg -3'
miRNA:   3'- -GGCUUGuCGagCCUU-UGGCCCUCg-UG- -5'
18979 5' -54.9 NC_004684.1 + 57170 0.66 0.805828
Target:  5'- gCCGAcgcGCAcGCUCGGGcgcAGgCGGGccuggaaggcggcGGCGCg -3'
miRNA:   3'- -GGCU---UGU-CGAGCCU---UUgGCCC-------------UCGUG- -5'
18979 5' -54.9 NC_004684.1 + 27968 0.66 0.797331
Target:  5'- gCCGAACAGCcCGaGAGugC-GGAGUucgGCg -3'
miRNA:   3'- -GGCUUGUCGaGC-CUUugGcCCUCG---UG- -5'
18979 5' -54.9 NC_004684.1 + 48078 0.66 0.797331
Target:  5'- aCCGGuucCGGCgUCGG---CCGGGcaAGCACg -3'
miRNA:   3'- -GGCUu--GUCG-AGCCuuuGGCCC--UCGUG- -5'
18979 5' -54.9 NC_004684.1 + 25856 0.66 0.797331
Target:  5'- gCCGGugGaGC-CGGAcgccaGGCCGGGGaucGCGCc -3'
miRNA:   3'- -GGCUugU-CGaGCCU-----UUGGCCCU---CGUG- -5'
18979 5' -54.9 NC_004684.1 + 15593 0.66 0.787732
Target:  5'- -gGGGCGcGCUCGGugcgcuACCGGGuGCcCg -3'
miRNA:   3'- ggCUUGU-CGAGCCuu----UGGCCCuCGuG- -5'
18979 5' -54.9 NC_004684.1 + 10804 0.66 0.787732
Target:  5'- aCCGuAGCGGCaucCGGcgGCUGGGccGCACc -3'
miRNA:   3'- -GGC-UUGUCGa--GCCuuUGGCCCu-CGUG- -5'
18979 5' -54.9 NC_004684.1 + 52750 0.66 0.777976
Target:  5'- -aGAGguGCU-GGccACCuGGGAGCGCa -3'
miRNA:   3'- ggCUUguCGAgCCuuUGG-CCCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 9959 0.66 0.777976
Target:  5'- cCUGcGCGGCgUCGGGAuCCGGcGGCAg -3'
miRNA:   3'- -GGCuUGUCG-AGCCUUuGGCCcUCGUg -5'
18979 5' -54.9 NC_004684.1 + 7866 0.67 0.768074
Target:  5'- gCCGucccaAG-UCGG-AACCGGuGAGCACa -3'
miRNA:   3'- -GGCuug--UCgAGCCuUUGGCC-CUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 37706 0.67 0.768074
Target:  5'- aCCG-ACGGCguUCGGcaugggcGGCCGGGcccGCACg -3'
miRNA:   3'- -GGCuUGUCG--AGCCu------UUGGCCCu--CGUG- -5'
18979 5' -54.9 NC_004684.1 + 9351 0.67 0.758036
Target:  5'- aUCGGcCAGCUCGGGGAU---GAGCACc -3'
miRNA:   3'- -GGCUuGUCGAGCCUUUGgccCUCGUG- -5'
18979 5' -54.9 NC_004684.1 + 63200 0.67 0.758036
Target:  5'- gCCGAACGGCcccaucuucUCGGccACCGGcGGCuCg -3'
miRNA:   3'- -GGCUUGUCG---------AGCCuuUGGCCcUCGuG- -5'
18979 5' -54.9 NC_004684.1 + 9595 0.67 0.747875
Target:  5'- gCUGGcGCAGCUCguacgGGAguGACCGGGuacggcuGCGCu -3'
miRNA:   3'- -GGCU-UGUCGAG-----CCU--UUGGCCCu------CGUG- -5'
18979 5' -54.9 NC_004684.1 + 30023 0.67 0.747875
Target:  5'- gCCGAgcuACAGCagaaGAcACCGGGGGCGa -3'
miRNA:   3'- -GGCU---UGUCGagc-CUuUGGCCCUCGUg -5'
18979 5' -54.9 NC_004684.1 + 36522 0.67 0.737599
Target:  5'- cCUGGGCAcggcGUUCGGGAucagcgaguACCGGGcGCAUu -3'
miRNA:   3'- -GGCUUGU----CGAGCCUU---------UGGCCCuCGUG- -5'
18979 5' -54.9 NC_004684.1 + 43240 0.67 0.737599
Target:  5'- cUCGc-CAGCgcgCGG--GCCGGaGAGCACg -3'
miRNA:   3'- -GGCuuGUCGa--GCCuuUGGCC-CUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.