miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18981 5' -60.9 NC_004684.1 + 31724 0.66 0.475494
Target:  5'- --cGCCGGUGGcGacaCACCGcCGCCGa- -3'
miRNA:   3'- uacCGGCCAUC-Cg--GUGGCaGCGGUac -5'
18981 5' -60.9 NC_004684.1 + 67115 0.66 0.475494
Target:  5'- gGUGGCC---AGGCCAUCGUggUGCCGg- -3'
miRNA:   3'- -UACCGGccaUCCGGUGGCA--GCGGUac -5'
18981 5' -60.9 NC_004684.1 + 19779 0.66 0.475494
Target:  5'- uUGGCuCGGccAGGCCuuGCCGccgCGCCGg- -3'
miRNA:   3'- uACCG-GCCa-UCCGG--UGGCa--GCGGUac -5'
18981 5' -60.9 NC_004684.1 + 4038 0.66 0.475494
Target:  5'- cAUGGCgaCGGU-GGCCuACCGgccaUCGCCGg- -3'
miRNA:   3'- -UACCG--GCCAuCCGG-UGGC----AGCGGUac -5'
18981 5' -60.9 NC_004684.1 + 11305 0.66 0.475494
Target:  5'- --cGCUGGU-GGCCACCGcUGCCuuUGg -3'
miRNA:   3'- uacCGGCCAuCCGGUGGCaGCGGu-AC- -5'
18981 5' -60.9 NC_004684.1 + 58485 0.66 0.475494
Target:  5'- -cGGCCGGgccaAGGCCuccacGCgCGgUGCCGUGc -3'
miRNA:   3'- uaCCGGCCa---UCCGG-----UG-GCaGCGGUAC- -5'
18981 5' -60.9 NC_004684.1 + 15362 0.66 0.465814
Target:  5'- -gGGCUGGU-GGCCACCaggguGUUgGCCAg- -3'
miRNA:   3'- uaCCGGCCAuCCGGUGG-----CAG-CGGUac -5'
18981 5' -60.9 NC_004684.1 + 33946 0.66 0.465814
Target:  5'- -aGGCCgaacgauccuuGGUuGGCC-CCGUUGCCGc- -3'
miRNA:   3'- uaCCGG-----------CCAuCCGGuGGCAGCGGUac -5'
18981 5' -60.9 NC_004684.1 + 40800 0.66 0.465814
Target:  5'- cUGGUCGucccGGCCACCGcCGCCc-- -3'
miRNA:   3'- uACCGGCcau-CCGGUGGCaGCGGuac -5'
18981 5' -60.9 NC_004684.1 + 20317 0.66 0.465814
Target:  5'- cAUGGCgGcGgcGGCCAUcgagaucggCGUCGCCcgGu -3'
miRNA:   3'- -UACCGgC-CauCCGGUG---------GCAGCGGuaC- -5'
18981 5' -60.9 NC_004684.1 + 49221 0.66 0.465814
Target:  5'- -cGGUCGGUgccGGGCCgggcgucgGCaCGUCGCCc-- -3'
miRNA:   3'- uaCCGGCCA---UCCGG--------UG-GCAGCGGuac -5'
18981 5' -60.9 NC_004684.1 + 12859 0.66 0.465814
Target:  5'- -aGGCCG--AGGCCGCCacCGCCGa- -3'
miRNA:   3'- uaCCGGCcaUCCGGUGGcaGCGGUac -5'
18981 5' -60.9 NC_004684.1 + 33185 0.66 0.465814
Target:  5'- -cGGCaaGGUc-GUCACCGUgGCCAUGg -3'
miRNA:   3'- uaCCGg-CCAucCGGUGGCAgCGGUAC- -5'
18981 5' -60.9 NC_004684.1 + 20349 0.66 0.465814
Target:  5'- -gGGCCGGgaacgcgccGGGCCggaaguaguACCGgcgCGCCAg- -3'
miRNA:   3'- uaCCGGCCa--------UCCGG---------UGGCa--GCGGUac -5'
18981 5' -60.9 NC_004684.1 + 51243 0.66 0.456238
Target:  5'- -cGGCCGGUcgauGCCGCaCG-CGCgCAUGa -3'
miRNA:   3'- uaCCGGCCAuc--CGGUG-GCaGCG-GUAC- -5'
18981 5' -60.9 NC_004684.1 + 9937 0.66 0.455286
Target:  5'- uGUGGCCGGgcugaccaugcucUGGGUCGCCacgGUCAUGg -3'
miRNA:   3'- -UACCGGCC-------------AUCCGGUGGcagCGGUAC- -5'
18981 5' -60.9 NC_004684.1 + 58659 0.66 0.455286
Target:  5'- cGUGGCUugcucauGGU-GGCCAuguuccCCGUCGaCCGUGc -3'
miRNA:   3'- -UACCGG-------CCAuCCGGU------GGCAGC-GGUAC- -5'
18981 5' -60.9 NC_004684.1 + 43253 0.66 0.446768
Target:  5'- -gGGCCGGagagcacGGCCAU-GUCGCCGc- -3'
miRNA:   3'- uaCCGGCCau-----CCGGUGgCAGCGGUac -5'
18981 5' -60.9 NC_004684.1 + 3498 0.66 0.446768
Target:  5'- cGUGGCCGccAGGaCGCCGcaaUCGCCGa- -3'
miRNA:   3'- -UACCGGCcaUCCgGUGGC---AGCGGUac -5'
18981 5' -60.9 NC_004684.1 + 41347 0.66 0.446768
Target:  5'- -cGGCCGGgccaAGGCCACCcgguucaUCGaCCGa- -3'
miRNA:   3'- uaCCGGCCa---UCCGGUGGc------AGC-GGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.