miRNA display CGI


Results 21 - 40 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18982 3' -65 NC_004684.1 + 63469 0.7 0.170642
Target:  5'- aCGCCGCcauCgGCUGGCgCGUCGgCCGcUCGg -3'
miRNA:   3'- gGCGGCGu--G-CGACCG-GCGGC-GGC-AGC- -5'
18982 3' -65 NC_004684.1 + 63053 0.66 0.316897
Target:  5'- aCCGCCuaACgGUUGGUggcggcuaccgUGCCGCCGUg- -3'
miRNA:   3'- -GGCGGcgUG-CGACCG-----------GCGGCGGCAgc -5'
18982 3' -65 NC_004684.1 + 63023 0.78 0.046517
Target:  5'- gCGCCGCGCGCUGGUCGgCuUCGUCa -3'
miRNA:   3'- gGCGGCGUGCGACCGGCgGcGGCAGc -5'
18982 3' -65 NC_004684.1 + 62690 0.7 0.179325
Target:  5'- gCGCCucgGCGCGgUGGCCGaCCGCaacggcaaggUGUCGa -3'
miRNA:   3'- gGCGG---CGUGCgACCGGC-GGCG----------GCAGC- -5'
18982 3' -65 NC_004684.1 + 62075 0.7 0.197872
Target:  5'- aCUGCUGCACGgUcGCCaGCgCGUCGUCGu -3'
miRNA:   3'- -GGCGGCGUGCgAcCGG-CG-GCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 61678 0.67 0.289367
Target:  5'- gCGCCuGCACGCcauUGGCguCGgUGCCGUgGg -3'
miRNA:   3'- gGCGG-CGUGCG---ACCG--GCgGCGGCAgC- -5'
18982 3' -65 NC_004684.1 + 61608 0.68 0.257639
Target:  5'- gCGCCuGCACgucacuGCUGGCgcgcaucgagCGCCGCCGcCu -3'
miRNA:   3'- gGCGG-CGUG------CGACCG----------GCGGCGGCaGc -5'
18982 3' -65 NC_004684.1 + 61519 0.68 0.234353
Target:  5'- gCGCCaGCagugacgugcagGCGCUGGCgUGCCGCUGgUUGg -3'
miRNA:   3'- gGCGG-CG------------UGCGACCG-GCGGCGGC-AGC- -5'
18982 3' -65 NC_004684.1 + 61315 0.78 0.047776
Target:  5'- aCCGCCGC-CG--GGCCGCCGCCcUCGg -3'
miRNA:   3'- -GGCGGCGuGCgaCCGGCGGCGGcAGC- -5'
18982 3' -65 NC_004684.1 + 60954 0.67 0.309834
Target:  5'- gCGCauCGCGCUcccGGCCgacaucGCCGCCGUgGa -3'
miRNA:   3'- gGCGgcGUGCGA---CCGG------CGGCGGCAgC- -5'
18982 3' -65 NC_004684.1 + 60547 0.68 0.257639
Target:  5'- aCUGCCcgGCAUGCUGGCCGagGUCGa-- -3'
miRNA:   3'- -GGCGG--CGUGCGACCGGCggCGGCagc -5'
18982 3' -65 NC_004684.1 + 60521 0.71 0.162337
Target:  5'- aUCGaCCGCAgGCUGaucucGCCGCgcccggUGCCGUCGa -3'
miRNA:   3'- -GGC-GGCGUgCGAC-----CGGCG------GCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 59975 0.7 0.197872
Target:  5'- gCCGCCGCAucgggguggaccUGCccggcaccgaccUGGCCGCCGUgG-CGg -3'
miRNA:   3'- -GGCGGCGU------------GCG------------ACCGGCGGCGgCaGC- -5'
18982 3' -65 NC_004684.1 + 59576 0.68 0.260069
Target:  5'- uCCGuuGgGgcCGCUGGCCGCgcaggugguggacauCGCCGcCGa -3'
miRNA:   3'- -GGCggCgU--GCGACCGGCG---------------GCGGCaGC- -5'
18982 3' -65 NC_004684.1 + 59548 0.66 0.324081
Target:  5'- aCCGCCaGCGCGC--GCCGuuGUCG-Ca -3'
miRNA:   3'- -GGCGG-CGUGCGacCGGCggCGGCaGc -5'
18982 3' -65 NC_004684.1 + 58712 0.66 0.316897
Target:  5'- gCGCgGCACca--GCCGCCacggGCCGUCGa -3'
miRNA:   3'- gGCGgCGUGcgacCGGCGG----CGGCAGC- -5'
18982 3' -65 NC_004684.1 + 58606 0.74 0.097406
Target:  5'- gCCGCCaacgGCACGCUGGaCCGCaGUCGgcgCGg -3'
miRNA:   3'- -GGCGG----CGUGCGACC-GGCGgCGGCa--GC- -5'
18982 3' -65 NC_004684.1 + 58376 0.68 0.263749
Target:  5'- gCCGCCccgcacggcaccGCGCGUggaggccuUGGCCcgGCCGCCGg-- -3'
miRNA:   3'- -GGCGG------------CGUGCG--------ACCGG--CGGCGGCagc -5'
18982 3' -65 NC_004684.1 + 57885 0.66 0.331385
Target:  5'- aCCGgUGCugGCUGGUgGCCgggcugaaggugGCCGg-- -3'
miRNA:   3'- -GGCgGCGugCGACCGgCGG------------CGGCagc -5'
18982 3' -65 NC_004684.1 + 57498 0.67 0.282784
Target:  5'- gCGCCGCACGCaGGUgccugCGCCGgaucCCGaggCGg -3'
miRNA:   3'- gGCGGCGUGCGaCCG-----GCGGC----GGCa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.