miRNA display CGI


Results 21 - 40 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18982 3' -65 NC_004684.1 + 27277 0.73 0.108041
Target:  5'- aCCGCCGCcaaagauCGCcgUGGCCaggucGCCGCCGUa- -3'
miRNA:   3'- -GGCGGCGu------GCG--ACCGG-----CGGCGGCAgc -5'
18982 3' -65 NC_004684.1 + 41776 0.73 0.105285
Target:  5'- gCCGUCGcCGCGCUGGgUGuuGCCGaggUCGg -3'
miRNA:   3'- -GGCGGC-GUGCGACCgGCggCGGC---AGC- -5'
18982 3' -65 NC_004684.1 + 43563 0.76 0.073041
Target:  5'- cCCGCCGCAC-CU-GCUGCCGCCG-Ca -3'
miRNA:   3'- -GGCGGCGUGcGAcCGGCGGCGGCaGc -5'
18982 3' -65 NC_004684.1 + 65411 0.78 0.044569
Target:  5'- cCUGCCugGCGCUGGCCguggugcacagcgagGCCGCCGUCGc -3'
miRNA:   3'- -GGCGGcgUGCGACCGG---------------CGGCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 20198 0.71 0.158322
Target:  5'- gCCGCCGCccaGCGgUGGCUGgaccUUGUCGUCGg -3'
miRNA:   3'- -GGCGGCG---UGCgACCGGC----GGCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 11740 0.72 0.132651
Target:  5'- gCCGCCguGCugGCgUGGCCGauGCCGaCGg -3'
miRNA:   3'- -GGCGG--CGugCG-ACCGGCggCGGCaGC- -5'
18982 3' -65 NC_004684.1 + 58606 0.74 0.097406
Target:  5'- gCCGCCaacgGCACGCUGGaCCGCaGUCGgcgCGg -3'
miRNA:   3'- -GGCGG----CGUGCGACC-GGCGgCGGCa--GC- -5'
18982 3' -65 NC_004684.1 + 65538 0.79 0.037546
Target:  5'- aCCGgCGCACGgUGGCCGCgCGCCG-Ca -3'
miRNA:   3'- -GGCgGCGUGCgACCGGCG-GCGGCaGc -5'
18982 3' -65 NC_004684.1 + 53107 0.72 0.126053
Target:  5'- aCGCCGaCugGCUgaccgacaccgGGCCGUCGCCG-Ca -3'
miRNA:   3'- gGCGGC-GugCGA-----------CCGGCGGCGGCaGc -5'
18982 3' -65 NC_004684.1 + 22373 0.84 0.01763
Target:  5'- gCCGCCGCGCGggccUUGGCCGCCGCCaggCGg -3'
miRNA:   3'- -GGCGGCGUGC----GACCGGCGGCGGca-GC- -5'
18982 3' -65 NC_004684.1 + 46681 0.74 0.099968
Target:  5'- aCCGCCGC-CGU----CGCCGCCGUCGa -3'
miRNA:   3'- -GGCGGCGuGCGaccgGCGGCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 34923 0.73 0.11976
Target:  5'- aCgGCUGCAUGCgcagcaGaCCGCCGUCGUCGg -3'
miRNA:   3'- -GgCGGCGUGCGac----C-GGCGGCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 26659 0.74 0.087765
Target:  5'- aCCGCCGCGCGCcagGGCgCGCCGgaaCG-CGu -3'
miRNA:   3'- -GGCGGCGUGCGa--CCG-GCGGCg--GCaGC- -5'
18982 3' -65 NC_004684.1 + 29313 0.75 0.076987
Target:  5'- gCGCCacaGCAUGUccUGGCCGuuGCCGUCc -3'
miRNA:   3'- gGCGG---CGUGCG--ACCGGCggCGGCAGc -5'
18982 3' -65 NC_004684.1 + 49270 0.77 0.056057
Target:  5'- gCCGCCGC-CGCc-GCCGCCGCCGa-- -3'
miRNA:   3'- -GGCGGCGuGCGacCGGCGGCGGCagc -5'
18982 3' -65 NC_004684.1 + 63023 0.78 0.046517
Target:  5'- gCGCCGCGCGCUGGUCGgCuUCGUCa -3'
miRNA:   3'- gGCGGCGUGCGACCGGCgGcGGCAGc -5'
18982 3' -65 NC_004684.1 + 14496 0.7 0.174936
Target:  5'- aCGUCGaaguCGCUGGCCGaguaaCCGUCGUCc -3'
miRNA:   3'- gGCGGCgu--GCGACCGGC-----GGCGGCAGc -5'
18982 3' -65 NC_004684.1 + 66794 0.71 0.158322
Target:  5'- uUCGCCGCgcaGCGCaaGaCCGCCGCCGg-- -3'
miRNA:   3'- -GGCGGCG---UGCGacC-GGCGGCGGCagc -5'
18982 3' -65 NC_004684.1 + 66421 0.71 0.152085
Target:  5'- cCCGgCGUcaccgggacguucgaGCGCUacuacGcGCCGCUGCCGUCGg -3'
miRNA:   3'- -GGCgGCG---------------UGCGA-----C-CGGCGGCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 10890 0.72 0.143147
Target:  5'- gCCGCCGgAUGCcgcuacgGuGCCGaCGCCGUCGc -3'
miRNA:   3'- -GGCGGCgUGCGa------C-CGGCgGCGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.