miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18983 3' -54 NC_004684.1 + 11289 0.66 0.849415
Target:  5'- gAGCUGauCGGCACCAcgcuGGUGgccaccgcugccuuuGGCGACa -3'
miRNA:   3'- gUCGAU--GCUGUGGUu---CUAC---------------CCGCUGc -5'
18983 3' -54 NC_004684.1 + 24604 0.66 0.846004
Target:  5'- aCAGCggACGugGCgCGc-AUGGGCGGCc -3'
miRNA:   3'- -GUCGa-UGCugUG-GUucUACCCGCUGc -5'
18983 3' -54 NC_004684.1 + 20306 0.66 0.846004
Target:  5'- -uGCgcCGACACCAug--GcGGCGGCGg -3'
miRNA:   3'- guCGauGCUGUGGUucuaC-CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 1101 0.66 0.846004
Target:  5'- aGGCcGCGACccggcgcaacugGCaCGAGAUGGuCGACGg -3'
miRNA:   3'- gUCGaUGCUG------------UG-GUUCUACCcGCUGC- -5'
18983 3' -54 NC_004684.1 + 28552 0.66 0.846004
Target:  5'- uCGGCgGCGugGauCCAGuuGAUGGGCuGGCGc -3'
miRNA:   3'- -GUCGaUGCugU--GGUU--CUACCCG-CUGC- -5'
18983 3' -54 NC_004684.1 + 50856 0.66 0.846004
Target:  5'- gCGGacaUGgGACACC--GAUGGGCGAa- -3'
miRNA:   3'- -GUCg--AUgCUGUGGuuCUACCCGCUgc -5'
18983 3' -54 NC_004684.1 + 30489 0.66 0.828424
Target:  5'- -uGCcACGGCagcGCCGGGAUGcGCGugGg -3'
miRNA:   3'- guCGaUGCUG---UGGUUCUACcCGCugC- -5'
18983 3' -54 NC_004684.1 + 18423 0.66 0.819323
Target:  5'- uCGGCUccggggGCGGCACCGgcgugcGGAacaGGGUGAUGu -3'
miRNA:   3'- -GUCGA------UGCUGUGGU------UCUa--CCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 45085 0.66 0.819323
Target:  5'- uGGUUGCGcCGCCAGGA-GGcCGACu -3'
miRNA:   3'- gUCGAUGCuGUGGUUCUaCCcGCUGc -5'
18983 3' -54 NC_004684.1 + 40683 0.66 0.819323
Target:  5'- cCAGCaaggugGCGACgaACUucAGcUGGGCGGCGg -3'
miRNA:   3'- -GUCGa-----UGCUG--UGGu-UCuACCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 16787 0.66 0.810027
Target:  5'- cCAGgUGCGGCGCgucguguGGUGGGCG-CGc -3'
miRNA:   3'- -GUCgAUGCUGUGguu----CUACCCGCuGC- -5'
18983 3' -54 NC_004684.1 + 40542 0.66 0.810027
Target:  5'- uGGCgaccuccGCGACcuCCAGGAgcUGGGCGAa- -3'
miRNA:   3'- gUCGa------UGCUGu-GGUUCU--ACCCGCUgc -5'
18983 3' -54 NC_004684.1 + 21091 0.66 0.810027
Target:  5'- gAGCUAUGgguGCGCCGcaGGAUcGGGcCGACc -3'
miRNA:   3'- gUCGAUGC---UGUGGU--UCUA-CCC-GCUGc -5'
18983 3' -54 NC_004684.1 + 61418 0.66 0.810027
Target:  5'- cCAcCUACGcCGCCGA---GGGCGGCGg -3'
miRNA:   3'- -GUcGAUGCuGUGGUUcuaCCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 28339 0.66 0.810027
Target:  5'- aGGCUGgcCGGgucCACCGcgcugugcuccGGGUGGGCGGCc -3'
miRNA:   3'- gUCGAU--GCU---GUGGU-----------UCUACCCGCUGc -5'
18983 3' -54 NC_004684.1 + 66436 0.66 0.810027
Target:  5'- aCAGgUACGACuuuacgUCAGGGU-GGCGGCGu -3'
miRNA:   3'- -GUCgAUGCUGu-----GGUUCUAcCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 26739 0.67 0.800547
Target:  5'- aGGCccGCGACACCcuGAUGGagaugacCGACGa -3'
miRNA:   3'- gUCGa-UGCUGUGGuuCUACCc------GCUGC- -5'
18983 3' -54 NC_004684.1 + 43459 0.67 0.800547
Target:  5'- gGGC-GCGGCAgC-AGGUGcGGCGGCa -3'
miRNA:   3'- gUCGaUGCUGUgGuUCUAC-CCGCUGc -5'
18983 3' -54 NC_004684.1 + 49168 0.67 0.790892
Target:  5'- cCGGU--UGGCGgCGAcGUGGGCGACGa -3'
miRNA:   3'- -GUCGauGCUGUgGUUcUACCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 26368 0.67 0.781074
Target:  5'- gGGCaACGGCACCGGcaacGUcGGCGGCGa -3'
miRNA:   3'- gUCGaUGCUGUGGUUc---UAcCCGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.