miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18983 5' -61.7 NC_004684.1 + 42201 0.66 0.433068
Target:  5'- --gGCCGUgGAGcugguGGCCgacgUGGCCGCCg- -3'
miRNA:   3'- uagUGGCAgCUU-----CCGG----ACCGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 27411 0.66 0.433068
Target:  5'- -cCGCCGUCGucaaagCUGGCCGCaCCGa -3'
miRNA:   3'- uaGUGGCAGCuuccg-GACCGGCG-GGU- -5'
18983 5' -61.7 NC_004684.1 + 9125 0.66 0.42757
Target:  5'- cAUCACCGcCGAggccauggucaagauGcucGGCCUGGCCGacgacaCCGu -3'
miRNA:   3'- -UAGUGGCaGCU---------------U---CCGGACCGGCg-----GGU- -5'
18983 5' -61.7 NC_004684.1 + 6013 0.66 0.423927
Target:  5'- -cCAUCGgacgCGguGGCCUuuaGGCCGCCa- -3'
miRNA:   3'- uaGUGGCa---GCuuCCGGA---CCGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 28063 0.66 0.423927
Target:  5'- gGUCGgccCCGgCGGuguGGCCgGGCCGCCg- -3'
miRNA:   3'- -UAGU---GGCaGCUu--CCGGaCCGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 61812 0.66 0.423927
Target:  5'- cUCAgCCGUgGucggagguggccGGGGCCcGGCCuGCCCAc -3'
miRNA:   3'- uAGU-GGCAgC------------UUCCGGaCCGG-CGGGU- -5'
18983 5' -61.7 NC_004684.1 + 57498 0.66 0.423927
Target:  5'- -aCACCgGUCGAGuGauacgCUGGCCGCCUg -3'
miRNA:   3'- uaGUGG-CAGCUUcCg----GACCGGCGGGu -5'
18983 5' -61.7 NC_004684.1 + 26360 0.66 0.414903
Target:  5'- gGUCACCGaaUCcuuGAGGCCUuccaGGCCcGCCUg -3'
miRNA:   3'- -UAGUGGC--AGc--UUCCGGA----CCGG-CGGGu -5'
18983 5' -61.7 NC_004684.1 + 708 0.66 0.414903
Target:  5'- -cCGCCGgUGGAcGGCCUGG-CGCuCCAa -3'
miRNA:   3'- uaGUGGCaGCUU-CCGGACCgGCG-GGU- -5'
18983 5' -61.7 NC_004684.1 + 9782 0.66 0.405997
Target:  5'- cUCGCCGUCGAuGGuUUUGGUCaGCUCGc -3'
miRNA:   3'- uAGUGGCAGCUuCC-GGACCGG-CGGGU- -5'
18983 5' -61.7 NC_004684.1 + 51032 0.66 0.405997
Target:  5'- -aCACCaUCGugcgccuggacGAGGCCgGGCUGUCCGg -3'
miRNA:   3'- uaGUGGcAGC-----------UUCCGGaCCGGCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 10802 0.66 0.405997
Target:  5'- -gCACCGUagcggcaucCGgcGGCUgGGCCGCaCCGa -3'
miRNA:   3'- uaGUGGCA---------GCuuCCGGaCCGGCG-GGU- -5'
18983 5' -61.7 NC_004684.1 + 6615 0.66 0.405997
Target:  5'- cUCACCGgaaccGGCCUGGCCaggGCCg- -3'
miRNA:   3'- uAGUGGCagcuuCCGGACCGG---CGGgu -5'
18983 5' -61.7 NC_004684.1 + 33194 0.66 0.397213
Target:  5'- cGUCACCGUggccauggcgaCGGAcaGCCcGGCgGCCCAa -3'
miRNA:   3'- -UAGUGGCA-----------GCUUc-CGGaCCGgCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 66577 0.66 0.397212
Target:  5'- -cCGCCGcC-AAGGCCUaGCCGCCa- -3'
miRNA:   3'- uaGUGGCaGcUUCCGGAcCGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 26641 0.66 0.397212
Target:  5'- -gCGCCGgaacgCGuacaccccGGCCUGaCCGCCCAg -3'
miRNA:   3'- uaGUGGCa----GCuu------CCGGACcGGCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 32983 0.66 0.388551
Target:  5'- gGUCAaccgCGUCGAGGGUgaGcaCCGCCCAc -3'
miRNA:   3'- -UAGUg---GCAGCUUCCGgaCc-GGCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 16297 0.66 0.388551
Target:  5'- uUCACUGUCGuaucAGaCCgGGCCGCCg- -3'
miRNA:   3'- uAGUGGCAGCu---UCcGGaCCGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 21825 0.67 0.380015
Target:  5'- cUCAUgGgcgCGAucagccGGGCauccaUGGCCGCCCGc -3'
miRNA:   3'- uAGUGgCa--GCU------UCCGg----ACCGGCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 6122 0.67 0.380014
Target:  5'- --gGCCG-CG-AGGCgCUGGCgGCCUAa -3'
miRNA:   3'- uagUGGCaGCuUCCG-GACCGgCGGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.