miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18984 5' -54.3 NC_004684.1 + 28416 0.66 0.82907
Target:  5'- cGCcgGUugACCUggUGGUCGACUggcaugacauugugCGCCAg -3'
miRNA:   3'- -CGa-CAugUGGA--GCCGGUUGAa-------------GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 53098 0.66 0.825454
Target:  5'- gGCUGaccgACACCg-GGCCG---UCGCCGc -3'
miRNA:   3'- -CGACa---UGUGGagCCGGUugaAGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 26529 0.66 0.81997
Target:  5'- cGCcGUACACCg-GGCCAccggcggcgaaccccGCUgccagcgCGCCGg -3'
miRNA:   3'- -CGaCAUGUGGagCCGGU---------------UGAa------GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 43977 0.66 0.816274
Target:  5'- aGCcGUGCgcgggcguACC-CGGCCAGCUgcguUgGCCAg -3'
miRNA:   3'- -CGaCAUG--------UGGaGCCGGUUGA----AgCGGU- -5'
18984 5' -54.3 NC_004684.1 + 61280 0.66 0.816274
Target:  5'- aGgUGUACGCCgaGGCCAccaACccCGCCGa -3'
miRNA:   3'- -CgACAUGUGGagCCGGU---UGaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 34538 0.66 0.816274
Target:  5'- aGCUGUAUgucgagGCCaUGGCCAGCUacgagagcgCGCUg -3'
miRNA:   3'- -CGACAUG------UGGaGCCGGUUGAa--------GCGGu -5'
18984 5' -54.3 NC_004684.1 + 61584 0.66 0.806903
Target:  5'- aGCUGggACGCCUCGGUggucgaGGCguccCGCCc -3'
miRNA:   3'- -CGACa-UGUGGAGCCGg-----UUGaa--GCGGu -5'
18984 5' -54.3 NC_004684.1 + 12121 0.66 0.806903
Target:  5'- uGCUGgucgaGCaugGCCUUGGCCAcCgcCGCCGc -3'
miRNA:   3'- -CGACa----UG---UGGAGCCGGUuGaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 33676 0.66 0.79735
Target:  5'- cGCUGUGCACCaccacCGcGCUGGacacccUCGCCAg -3'
miRNA:   3'- -CGACAUGUGGa----GC-CGGUUga----AGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 60926 0.66 0.79735
Target:  5'- gGCgucGcACGCCUCGGCCAG-UUCGaCAu -3'
miRNA:   3'- -CGa--CaUGUGGAGCCGGUUgAAGCgGU- -5'
18984 5' -54.3 NC_004684.1 + 57348 0.66 0.79735
Target:  5'- aGCUGUGCG----GGCCGACggUGCCGc -3'
miRNA:   3'- -CGACAUGUggagCCGGUUGaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 61642 0.66 0.79735
Target:  5'- uGCUGccGCACC-CGGaCCAACcagcggcaCGCCAg -3'
miRNA:   3'- -CGACa-UGUGGaGCC-GGUUGaa------GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 57936 0.66 0.79735
Target:  5'- cGCUGgcaaucggGCggguACCggCGGCCAGCacCGCCGg -3'
miRNA:   3'- -CGACa-------UG----UGGa-GCCGGUUGaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 14384 0.66 0.796385
Target:  5'- cGCUGgugGCGCuggacgacgguuaCUCGGCCAgcgACUUCGaCGu -3'
miRNA:   3'- -CGACa--UGUG-------------GAGCCGGU---UGAAGCgGU- -5'
18984 5' -54.3 NC_004684.1 + 45410 0.66 0.787626
Target:  5'- cCUGgcgcacCACCUUGGCCucggugUCGCCGc -3'
miRNA:   3'- cGACau----GUGGAGCCGGuuga--AGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 6218 0.66 0.787626
Target:  5'- ----cGCgAUCUCGGCCAGCUgggCgGCCAg -3'
miRNA:   3'- cgacaUG-UGGAGCCGGUUGAa--G-CGGU- -5'
18984 5' -54.3 NC_004684.1 + 57125 0.66 0.787626
Target:  5'- cGCUGgcaGCACUggcgCGGCUGG-UUCGCCu -3'
miRNA:   3'- -CGACa--UGUGGa---GCCGGUUgAAGCGGu -5'
18984 5' -54.3 NC_004684.1 + 67174 0.66 0.787626
Target:  5'- cGCUGgcCGCCgaGGCCAACgccCGCa- -3'
miRNA:   3'- -CGACauGUGGagCCGGUUGaa-GCGgu -5'
18984 5' -54.3 NC_004684.1 + 62204 0.66 0.787626
Target:  5'- --aGUuCACCgacGCCAugUUCGCCAg -3'
miRNA:   3'- cgaCAuGUGGagcCGGUugAAGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 26075 0.66 0.786644
Target:  5'- ----aACACCUCGGCguaCGACUccagcggUCGCCu -3'
miRNA:   3'- cgacaUGUGGAGCCG---GUUGA-------AGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.