miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18985 3' -56.9 NC_004684.1 + 3176 0.66 0.72944
Target:  5'- aGCUCGGAaaccgggagcacggaGCGggggUCgaUCAuCGGCGCGCc -3'
miRNA:   3'- -CGAGCCUa--------------CGCa---AGa-GGU-GCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 27169 0.66 0.728417
Target:  5'- aGCUaCGGcgGCGacCUggCCACGGCGaucuuugGCg -3'
miRNA:   3'- -CGA-GCCuaCGCaaGA--GGUGCCGCg------CG- -5'
18985 3' -56.9 NC_004684.1 + 65754 0.66 0.728417
Target:  5'- cCUCGcGG-GCGUUggCCGCcGCGCGCc -3'
miRNA:   3'- cGAGC-CUaCGCAAgaGGUGcCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 44647 0.66 0.728417
Target:  5'- aCUCGGcccacUGCGUcacccgCUgCUGCGGCgGCGCg -3'
miRNA:   3'- cGAGCCu----ACGCAa-----GA-GGUGCCG-CGCG- -5'
18985 3' -56.9 NC_004684.1 + 61922 0.66 0.728417
Target:  5'- cGCg-GGGUGCGgg--CCACGGCaccCGCc -3'
miRNA:   3'- -CGagCCUACGCaagaGGUGCCGc--GCG- -5'
18985 3' -56.9 NC_004684.1 + 21655 0.66 0.718133
Target:  5'- cGCUCucg-GCGUUCUCCAucuCGGUGuCGa -3'
miRNA:   3'- -CGAGccuaCGCAAGAGGU---GCCGC-GCg -5'
18985 3' -56.9 NC_004684.1 + 17279 0.66 0.707769
Target:  5'- uGCUCGGcgGCGcugguuUUCUggCCGgGGuCGCGg -3'
miRNA:   3'- -CGAGCCuaCGC------AAGA--GGUgCC-GCGCg -5'
18985 3' -56.9 NC_004684.1 + 12964 0.66 0.707769
Target:  5'- gGCUCcccGGcgGCGgcCUCgGCGGUG-GCg -3'
miRNA:   3'- -CGAG---CCuaCGCaaGAGgUGCCGCgCG- -5'
18985 3' -56.9 NC_004684.1 + 11692 0.66 0.69629
Target:  5'- aGCUCGG-UGcCGUcgUCCAggcgcacCGGCGgGCu -3'
miRNA:   3'- -CGAGCCuAC-GCAagAGGU-------GCCGCgCG- -5'
18985 3' -56.9 NC_004684.1 + 11907 0.66 0.686844
Target:  5'- cGC-CGGAcagcgGCGcgcucgcgcccUUCUCCACGGUG-GCc -3'
miRNA:   3'- -CGaGCCUa----CGC-----------AAGAGGUGCCGCgCG- -5'
18985 3' -56.9 NC_004684.1 + 60319 0.66 0.686844
Target:  5'- cCUCGGcaAUGCGUUCgagcgcgaUCACcGCGCGUu -3'
miRNA:   3'- cGAGCC--UACGCAAGa-------GGUGcCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 35407 0.66 0.682633
Target:  5'- uGCUUGGGcgaguucuuguucGCGUUgucgCUCCACGGCG-GUg -3'
miRNA:   3'- -CGAGCCUa------------CGCAA----GAGGUGCCGCgCG- -5'
18985 3' -56.9 NC_004684.1 + 8436 0.66 0.676303
Target:  5'- aGCUC-GAUGauuGUUUUCUucucGCuGGCGCGCa -3'
miRNA:   3'- -CGAGcCUACg--CAAGAGG----UG-CCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 27844 0.66 0.675247
Target:  5'- aGCcCGGGcgacaccUGCGUcaUCgACGGCGCGa -3'
miRNA:   3'- -CGaGCCU-------ACGCAagAGgUGCCGCGCg -5'
18985 3' -56.9 NC_004684.1 + 8145 0.67 0.665723
Target:  5'- uGCUCGGGUGCagcagaucGUcaaccagaUCgCCgGgGGCGCGCu -3'
miRNA:   3'- -CGAGCCUACG--------CA--------AGaGG-UgCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 46798 0.67 0.665723
Target:  5'- -gUCGGugGCGcgCUCgCACagGGCGCGCc -3'
miRNA:   3'- cgAGCCuaCGCaaGAG-GUG--CCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 10215 0.67 0.665723
Target:  5'- aGgUCaGcgGCGUUCUCCAgGuccaCGCGCu -3'
miRNA:   3'- -CgAGcCuaCGCAAGAGGUgCc---GCGCG- -5'
18985 3' -56.9 NC_004684.1 + 39037 0.67 0.665723
Target:  5'- gGCUCGGcgGUG---UCCAUuGUGCGCc -3'
miRNA:   3'- -CGAGCCuaCGCaagAGGUGcCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 66348 0.67 0.655114
Target:  5'- cGC-CGGG-GCGggCggCCAgGGCGaCGCg -3'
miRNA:   3'- -CGaGCCUaCGCaaGa-GGUgCCGC-GCG- -5'
18985 3' -56.9 NC_004684.1 + 43778 0.67 0.655114
Target:  5'- gGC-CGGGUacgucgugcuugGCGUUCUUacgguggUGGCGCGCg -3'
miRNA:   3'- -CGaGCCUA------------CGCAAGAGgu-----GCCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.