miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18989 3' -59.3 NC_004684.1 + 52912 0.66 0.569706
Target:  5'- gCCAgcaCGGCGGCGuGGccgcauuccagGCAGGCGc -3'
miRNA:   3'- aGGUg--GCCGCCGU-CCuaua-------CGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 53469 0.66 0.56552
Target:  5'- -gCACCGGCaacGGguGGuUGgccagGUAGGCGu -3'
miRNA:   3'- agGUGGCCG---CCguCCuAUa----CGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 11880 0.66 0.56552
Target:  5'- -gCGCUGGCGGUgaacacaccGGGAUucaacGUGCGcGGCa -3'
miRNA:   3'- agGUGGCCGCCG---------UCCUA-----UACGU-CCGc -5'
18989 3' -59.3 NC_004684.1 + 15932 0.66 0.56552
Target:  5'- -gCACCGGagccuGGCGGGGccuacaucggcAUGCAGGCc -3'
miRNA:   3'- agGUGGCCg----CCGUCCUa----------UACGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 26411 0.66 0.55509
Target:  5'- gCCACCGGCGcGCuGGca--GCGGGg- -3'
miRNA:   3'- aGGUGGCCGC-CGuCCuauaCGUCCgc -5'
18989 3' -59.3 NC_004684.1 + 33124 0.66 0.55509
Target:  5'- -gCGCUugGGCgGGCGGGAUcAUGUuGGCGa -3'
miRNA:   3'- agGUGG--CCG-CCGUCCUA-UACGuCCGC- -5'
18989 3' -59.3 NC_004684.1 + 7350 0.66 0.551972
Target:  5'- cCCGCCGGUGcGCGccguGGAgaacgcauccgagcUGUGCuGGUGg -3'
miRNA:   3'- aGGUGGCCGC-CGU----CCU--------------AUACGuCCGC- -5'
18989 3' -59.3 NC_004684.1 + 40381 0.66 0.544718
Target:  5'- cUCGgCGGUGGCGGccuUcgGCAGGCc -3'
miRNA:   3'- aGGUgGCCGCCGUCcu-AuaCGUCCGc -5'
18989 3' -59.3 NC_004684.1 + 50023 0.66 0.544718
Target:  5'- aCCGUCGGCGGCAGcGuggccgGUGCcuGGCu -3'
miRNA:   3'- aGGUGGCCGCCGUC-Cua----UACGu-CCGc -5'
18989 3' -59.3 NC_004684.1 + 52578 0.66 0.543685
Target:  5'- -aCACCGGUcGCAacgcgcuGGAgGUGguGGCGg -3'
miRNA:   3'- agGUGGCCGcCGU-------CCUaUACguCCGC- -5'
18989 3' -59.3 NC_004684.1 + 46724 0.66 0.542651
Target:  5'- gCCACCgacauuacguugaGGCGGCGGuauUGUccagcgugcggacGCAGGCGg -3'
miRNA:   3'- aGGUGG-------------CCGCCGUCcu-AUA-------------CGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 22273 0.66 0.540587
Target:  5'- aCCGCCuGGCGGCGGccaaggcccGCGcGGCGg -3'
miRNA:   3'- aGGUGG-CCGCCGUCcuaua----CGU-CCGC- -5'
18989 3' -59.3 NC_004684.1 + 59448 0.66 0.53441
Target:  5'- cCCACCGGUGuGCGccGGUcgGC-GGCGa -3'
miRNA:   3'- aGGUGGCCGC-CGUc-CUAuaCGuCCGC- -5'
18989 3' -59.3 NC_004684.1 + 33513 0.66 0.53441
Target:  5'- cUCGCgGGCGGUGGcGGcUAUGCGGGg- -3'
miRNA:   3'- aGGUGgCCGCCGUC-CU-AUACGUCCgc -5'
18989 3' -59.3 NC_004684.1 + 18713 0.66 0.53441
Target:  5'- cUgACCGGUGGCAcgcucucgcuGGAUGUGgC-GGCGu -3'
miRNA:   3'- aGgUGGCCGCCGU----------CCUAUAC-GuCCGC- -5'
18989 3' -59.3 NC_004684.1 + 2957 0.66 0.53441
Target:  5'- gCCAUCGGCGcGCugcuguUGCGGGUGg -3'
miRNA:   3'- aGGUGGCCGC-CGuccuauACGUCCGC- -5'
18989 3' -59.3 NC_004684.1 + 37757 0.66 0.53441
Target:  5'- aUCCACCuGGCGcacCGGGucgAUGCcugaccGGGCGg -3'
miRNA:   3'- -AGGUGG-CCGCc--GUCCua-UACG------UCCGC- -5'
18989 3' -59.3 NC_004684.1 + 2784 0.66 0.53441
Target:  5'- -gCACCGGCcaGGCcGGggAUGCGGuGCc -3'
miRNA:   3'- agGUGGCCG--CCGuCCuaUACGUC-CGc -5'
18989 3' -59.3 NC_004684.1 + 8675 0.66 0.524171
Target:  5'- gCCACCGGCgcguucaugcucGGCAGGcucaucucGUGC-GGCa -3'
miRNA:   3'- aGGUGGCCG------------CCGUCCua------UACGuCCGc -5'
18989 3' -59.3 NC_004684.1 + 62093 0.66 0.524171
Target:  5'- gUCC-CCGucgcgauugugcGCGGCGGG---UGCGGGUGg -3'
miRNA:   3'- -AGGuGGC------------CGCCGUCCuauACGUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.