miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18991 3' -55.6 NC_004684.1 + 61066 0.72 0.438654
Target:  5'- aCGgGCCGGUGGCGgcAUUgucuccgcaacGCCGCCa -3'
miRNA:   3'- gGUgCGGCUACUGCauUGA-----------CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 61014 0.68 0.686364
Target:  5'- aCugGCCGA-GGCGUGcgacGCcGUgGCCGa -3'
miRNA:   3'- gGugCGGCUaCUGCAU----UGaCGgCGGC- -5'
18991 3' -55.6 NC_004684.1 + 59942 0.66 0.797313
Target:  5'- aCCugGCCGccGUGGCGgcguuCUGguUCGCCu -3'
miRNA:   3'- -GGugCGGC--UACUGCauu--GAC--GGCGGc -5'
18991 3' -55.6 NC_004684.1 + 59564 0.68 0.654495
Target:  5'- gCugGCCGcgcagGugGUGGacaucGCCGCCGa -3'
miRNA:   3'- gGugCGGCua---CugCAUUga---CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 58505 0.72 0.438654
Target:  5'- gCCGCGCCGAcuGCGguccAGCgUGCCGuuGg -3'
miRNA:   3'- -GGUGCGGCUacUGCa---UUG-ACGGCggC- -5'
18991 3' -55.6 NC_004684.1 + 58410 0.67 0.738361
Target:  5'- gCGCGCC-AUGACccGGC-GUCGCCGg -3'
miRNA:   3'- gGUGCGGcUACUGcaUUGaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 58391 0.66 0.758526
Target:  5'- aCCGCGCgUGGaGGCcuUGGCccgGCCGCCGg -3'
miRNA:   3'- -GGUGCG-GCUaCUGc-AUUGa--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 57902 0.7 0.558796
Target:  5'- gCCGgGCUGAagGugGccgGGCUGaCCGCCGa -3'
miRNA:   3'- -GGUgCGGCUa-CugCa--UUGAC-GGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 57817 0.69 0.62245
Target:  5'- aCCACgGCCuGGUcccGGCGguGCUgGCCGCCGg -3'
miRNA:   3'- -GGUG-CGG-CUA---CUGCauUGA-CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 57767 0.71 0.467406
Target:  5'- gCCugGCCGAUGGCcac-CUGCUGUgGg -3'
miRNA:   3'- -GGugCGGCUACUGcauuGACGGCGgC- -5'
18991 3' -55.6 NC_004684.1 + 57136 0.69 0.62245
Target:  5'- aCCGCGCUGGUGcCGUGGCccaccgUGaCCGaCCa -3'
miRNA:   3'- -GGUGCGGCUACuGCAUUG------AC-GGC-GGc -5'
18991 3' -55.6 NC_004684.1 + 56309 0.66 0.758526
Target:  5'- gCGCGCCGG-GACGUggaGACcgcGCUGCgCGa -3'
miRNA:   3'- gGUGCGGCUaCUGCA---UUGa--CGGCG-GC- -5'
18991 3' -55.6 NC_004684.1 + 56025 0.66 0.787835
Target:  5'- aCCACGCUGcUGGCcaccaccgugGGCcuggagGCCGCCGu -3'
miRNA:   3'- -GGUGCGGCuACUGca--------UUGa-----CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 55549 0.67 0.748499
Target:  5'- cUCGCGCCGcUGGCcgccGUGGCccgGUgGCCGg -3'
miRNA:   3'- -GGUGCGGCuACUG----CAUUGa--CGgCGGC- -5'
18991 3' -55.6 NC_004684.1 + 54304 0.67 0.717791
Target:  5'- gCugGCCGAccucGGCcccgAGCagGCCGCCGg -3'
miRNA:   3'- gGugCGGCUa---CUGca--UUGa-CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 54252 0.69 0.590475
Target:  5'- aCCGCGCCGG-GAC--AGCUccucagccagcGCCGCCa -3'
miRNA:   3'- -GGUGCGGCUaCUGcaUUGA-----------CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 53200 0.7 0.569309
Target:  5'- cCUAC-CCGcGUGAUGUGGCcuugcagGCCGCCGc -3'
miRNA:   3'- -GGUGcGGC-UACUGCAUUGa------CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 52723 0.67 0.728121
Target:  5'- gCAUGCCGGUGAUGgcGACgUGCCcggcaCCGa -3'
miRNA:   3'- gGUGCGGCUACUGCa-UUG-ACGGc----GGC- -5'
18991 3' -55.6 NC_004684.1 + 52566 0.73 0.401945
Target:  5'- aCGCGCUGGagGugGUGGCggccaUGCCGUCGg -3'
miRNA:   3'- gGUGCGGCUa-CugCAUUG-----ACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 52167 0.66 0.806628
Target:  5'- ---gGCCGGUGGCauggAGCgggcguucaagGCCGCCGg -3'
miRNA:   3'- ggugCGGCUACUGca--UUGa----------CGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.