Results 21 - 40 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18991 | 3' | -55.6 | NC_004684.1 | + | 64773 | 0.71 | 0.487105 |
Target: 5'- aCAUGCuCGAcuggGACGUAcgcaaggugccGCUGCgCGCCGa -3' miRNA: 3'- gGUGCG-GCUa---CUGCAU-----------UGACG-GCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 57767 | 0.71 | 0.467406 |
Target: 5'- gCCugGCCGAUGGCcac-CUGCUGUgGg -3' miRNA: 3'- -GGugCGGCUACUGcauuGACGGCGgC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 24934 | 0.73 | 0.367248 |
Target: 5'- aCgGC-CCGGUGGCGcUAccGCUGCCGCCc -3' miRNA: 3'- -GgUGcGGCUACUGC-AU--UGACGGCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 50697 | 0.79 | 0.160945 |
Target: 5'- gCCACGCCGAUGACcc-GCcGaCCGCCGa -3' miRNA: 3'- -GGUGCGGCUACUGcauUGaC-GGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 53200 | 0.7 | 0.569309 |
Target: 5'- cCUAC-CCGcGUGAUGUGGCcuugcagGCCGCCGc -3' miRNA: 3'- -GGUGcGGC-UACUGCAUUGa------CGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 18249 | 0.7 | 0.531735 |
Target: 5'- aCGCGCCGAUuucGAUGUuGCcgagcgugaacuccuUGCCGCCc -3' miRNA: 3'- gGUGCGGCUA---CUGCAuUG---------------ACGGCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 924 | 0.72 | 0.447174 |
Target: 5'- gCACGCCGuugaucuGUGugGUGuccauGCggGCCGCCa -3' miRNA: 3'- gGUGCGGC-------UACugCAU-----UGa-CGGCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 26715 | 0.82 | 0.101555 |
Target: 5'- uCCGCGCCGAcggugucguUGGCGaUGACgccGCCGCCGg -3' miRNA: 3'- -GGUGCGGCU---------ACUGC-AUUGa--CGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 32766 | 0.71 | 0.51736 |
Target: 5'- --uUGCCGAgGcCGUAGCcaUGCCGCCGc -3' miRNA: 3'- gguGCGGCUaCuGCAUUG--ACGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 15783 | 0.83 | 0.093489 |
Target: 5'- aCgAUGCCGGUGGCGUcGgUGCCGCCGc -3' miRNA: 3'- -GgUGCGGCUACUGCAuUgACGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 4990 | 0.72 | 0.448127 |
Target: 5'- gCCGCcgagGCCGGUGGCGaccagGCCGCCu -3' miRNA: 3'- -GGUG----CGGCUACUGCauugaCGGCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 44368 | 0.71 | 0.4971 |
Target: 5'- gCgACGCCG-UGcACGagugGugUGCCGCCGu -3' miRNA: 3'- -GgUGCGGCuAC-UGCa---UugACGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 18459 | 0.73 | 0.401945 |
Target: 5'- aCuuGCCGGUGAUGUcgAGCggcaccgcGCCGCCGg -3' miRNA: 3'- gGugCGGCUACUGCA--UUGa-------CGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 24159 | 0.73 | 0.384337 |
Target: 5'- gUCACGCCGuUGuAgGUGACcgUGCCGUCGg -3' miRNA: 3'- -GGUGCGGCuAC-UgCAUUG--ACGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 4224 | 0.77 | 0.237621 |
Target: 5'- uCCGCGCCGAUG-CGcuccugGACcuggaGCCGCCGg -3' miRNA: 3'- -GGUGCGGCUACuGCa-----UUGa----CGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 26490 | 0.79 | 0.165273 |
Target: 5'- gCGCGCCGGUGGCGgcguUGGCcagaucGCCGCCGa -3' miRNA: 3'- gGUGCGGCUACUGC----AUUGa-----CGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 61541 | 0.69 | 0.611772 |
Target: 5'- aCGCGagcaCCGgcGGCGaGACaaUGCCGCCGg -3' miRNA: 3'- gGUGC----GGCuaCUGCaUUG--ACGGCGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 20125 | 0.69 | 0.576698 |
Target: 5'- aCCGCGCUGAUGGCGgggucuucaggcaccACgGCCuCCGg -3' miRNA: 3'- -GGUGCGGCUACUGCau-------------UGaCGGcGGC- -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 47704 | 0.7 | 0.548337 |
Target: 5'- gCCgACGCCGAguaccGACGgcgGugUGCgGCCu -3' miRNA: 3'- -GG-UGCGGCUa----CUGCa--UugACGgCGGc -5' |
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18991 | 3' | -55.6 | NC_004684.1 | + | 38563 | 0.7 | 0.53794 |
Target: 5'- -gACGCCGGUGccugccuugucgGCGUGAUcgcGCCGUCGg -3' miRNA: 3'- ggUGCGGCUAC------------UGCAUUGa--CGGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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