Results 1 - 20 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18994 | 3' | -58.2 | NC_004684.1 | + | 42000 | 0.65 | 0.627792 |
Target: 5'- aCGGCcacgaugucgucgCGGUCGGCCAgcgcguucaugucGCGGGC-CUGCg -3' miRNA: 3'- -GCCGa------------GUUAGCCGGU-------------CGCCUGuGGUG- -5' |
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18994 | 3' | -58.2 | NC_004684.1 | + | 53372 | 0.66 | 0.62245 |
Target: 5'- uGGCUCAGcccCGGUgGGUGGGaGCCGa -3' miRNA: 3'- gCCGAGUUa--GCCGgUCGCCUgUGGUg -5' |
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18994 | 3' | -58.2 | NC_004684.1 | + | 22107 | 0.66 | 0.62245 |
Target: 5'- gCGGUUCAgGUCGGCgAGCaccGGCcCCAUg -3' miRNA: 3'- -GCCGAGU-UAGCCGgUCGc--CUGuGGUG- -5' |
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18994 | 3' | -58.2 | NC_004684.1 | + | 37218 | 0.66 | 0.62245 |
Target: 5'- gCGGCgCAGUgcGCUGGCGGcACGCCAg -3' miRNA: 3'- -GCCGaGUUAgcCGGUCGCC-UGUGGUg -5' |
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18994 | 3' | -58.2 | NC_004684.1 | + | 47621 | 0.66 | 0.62245 |
Target: 5'- uCGGUacUCGgcGUCGGCCuugucGUGGACgGCCAg -3' miRNA: 3'- -GCCG--AGU--UAGCCGGu----CGCCUG-UGGUg -5' |
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18994 | 3' | -58.2 | NC_004684.1 | + | 63073 | 0.66 | 0.62245 |
Target: 5'- cCGGC-CAc-CGGCCAcGUGcGCACCACc -3' miRNA: 3'- -GCCGaGUuaGCCGGU-CGCcUGUGGUG- -5' |
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18994 | 3' | -58.2 | NC_004684.1 | + | 18607 | 0.66 | 0.611772 |
Target: 5'- uGGCUUuga-GGCCAGCgacuGGGCgACCAg -3' miRNA: 3'- gCCGAGuuagCCGGUCG----CCUG-UGGUg -5' |
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18994 | 3' | -58.2 | NC_004684.1 | + | 24955 | 0.66 | 0.611772 |
Target: 5'- gCGGCUUGAUgggggugccgaaCGGcCCGGUGG-CGCUACc -3' miRNA: 3'- -GCCGAGUUA------------GCC-GGUCGCCuGUGGUG- -5' |
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18994 | 3' | -58.2 | NC_004684.1 | + | 28058 | 0.66 | 0.611772 |
Target: 5'- cCGGU--GGUCGGCCccGGCGGuguggccgggcCGCCGCg -3' miRNA: 3'- -GCCGagUUAGCCGG--UCGCCu----------GUGGUG- -5' |
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18994 | 3' | -58.2 | NC_004684.1 | + | 28859 | 0.66 | 0.611772 |
Target: 5'- uGGCgucuccCGGUCGGCaUAGUGGgaACACCGa -3' miRNA: 3'- gCCGa-----GUUAGCCG-GUCGCC--UGUGGUg -5' |
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18994 | 3' | -58.2 | NC_004684.1 | + | 27314 | 0.66 | 0.611772 |
Target: 5'- -uGCUCGGUgCGGCCAGCuuuGACgACgGCg -3' miRNA: 3'- gcCGAGUUA-GCCGGUCGc--CUG-UGgUG- -5' |
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18994 | 3' | -58.2 | NC_004684.1 | + | 36902 | 0.66 | 0.611772 |
Target: 5'- -aGCUCGGacUGGCCGGUGG-CAUCGCc -3' miRNA: 3'- gcCGAGUUa-GCCGGUCGCCuGUGGUG- -5' |
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18994 | 3' | -58.2 | NC_004684.1 | + | 65674 | 0.66 | 0.609638 |
Target: 5'- gCGGCUCAugaccgaGGCCAuggcggcugaccuGCGGuauuacuacggguACGCCACc -3' miRNA: 3'- -GCCGAGUuag----CCGGU-------------CGCC-------------UGUGGUG- -5' |
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18994 | 3' | -58.2 | NC_004684.1 | + | 11479 | 0.66 | 0.607505 |
Target: 5'- uCGGCgugaacgaGGCCAcGaUGGACGCCACc -3' miRNA: 3'- -GCCGaguuag--CCGGU-C-GCCUGUGGUG- -5' |
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18994 | 3' | -58.2 | NC_004684.1 | + | 4175 | 0.66 | 0.601111 |
Target: 5'- uGGCcCGGUUGcGcCCGGCGGGCGCgGu -3' miRNA: 3'- gCCGaGUUAGC-C-GGUCGCCUGUGgUg -5' |
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18994 | 3' | -58.2 | NC_004684.1 | + | 29548 | 0.66 | 0.601111 |
Target: 5'- cCGGUguacCGAUUcuggGGCCgcugccuuacaaGGCGGugGCCGCa -3' miRNA: 3'- -GCCGa---GUUAG----CCGG------------UCGCCugUGGUG- -5' |
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18994 | 3' | -58.2 | NC_004684.1 | + | 47581 | 0.66 | 0.601111 |
Target: 5'- uCGGCUCAGugugcUCGGCgauguaGGCcGcACACCGCc -3' miRNA: 3'- -GCCGAGUU-----AGCCGg-----UCGcC-UGUGGUG- -5' |
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18994 | 3' | -58.2 | NC_004684.1 | + | 6401 | 0.66 | 0.601111 |
Target: 5'- uCGGC-CAAguaCGGCCuGGUGGACcuggACCAg -3' miRNA: 3'- -GCCGaGUUa--GCCGG-UCGCCUG----UGGUg -5' |
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18994 | 3' | -58.2 | NC_004684.1 | + | 15945 | 0.66 | 0.601111 |
Target: 5'- aCGuGCUCGAugaccUCGGCguGCGucgguguggcGAUGCCGCg -3' miRNA: 3'- -GC-CGAGUU-----AGCCGguCGC----------CUGUGGUG- -5' |
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18994 | 3' | -58.2 | NC_004684.1 | + | 53933 | 0.66 | 0.600046 |
Target: 5'- gGGgUCAccguGUCGGCCAGgcacagcUGaGCACCGCa -3' miRNA: 3'- gCCgAGU----UAGCCGGUC-------GCcUGUGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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