miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18995 5' -61.1 NC_004684.1 + 45516 0.72 0.207341
Target:  5'- aUGaGCGGCGGCGacaccgaggccaagGugGUGCGcCAGGGu -3'
miRNA:   3'- cACgCGCCGCCGC--------------UugCACGC-GUCCU- -5'
18995 5' -61.1 NC_004684.1 + 25471 0.74 0.145528
Target:  5'- uGUGCGCGGCGGCGua-G-GCGCugaccGGGu -3'
miRNA:   3'- -CACGCGCCGCCGCuugCaCGCGu----CCU- -5'
18995 5' -61.1 NC_004684.1 + 21376 0.66 0.470199
Target:  5'- uUGCGCagauacGGCcgGGCGcGCGUGC-CGGGGu -3'
miRNA:   3'- cACGCG------CCG--CCGCuUGCACGcGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 23333 0.66 0.432679
Target:  5'- uUGCGUGGUGGCGucGCGgaGCcauuuCAGGAa -3'
miRNA:   3'- cACGCGCCGCCGCu-UGCa-CGc----GUCCU- -5'
18995 5' -61.1 NC_004684.1 + 31485 0.68 0.347082
Target:  5'- -cGCGuUGGCcugguuGGCGAGCGUGaUGguGGAc -3'
miRNA:   3'- caCGC-GCCG------CCGCUUGCAC-GCguCCU- -5'
18995 5' -61.1 NC_004684.1 + 42227 0.74 0.143247
Target:  5'- cGUGCGUGGUGGCGucgGCGUugaacaccaugucgcGCGCGGuGAa -3'
miRNA:   3'- -CACGCGCCGCCGCu--UGCA---------------CGCGUC-CU- -5'
18995 5' -61.1 NC_004684.1 + 24261 0.66 0.429936
Target:  5'- uUGgGCGGCGGCaccgccugcGGACccugcaccggagcgGUGCGCAGcGGg -3'
miRNA:   3'- cACgCGCCGCCG---------CUUG--------------CACGCGUC-CU- -5'
18995 5' -61.1 NC_004684.1 + 40707 0.78 0.072237
Target:  5'- -cGCGCGGCGGUGAucaACGUGgUGCuGGAc -3'
miRNA:   3'- caCGCGCCGCCGCU---UGCAC-GCGuCCU- -5'
18995 5' -61.1 NC_004684.1 + 13721 1.08 0.00042
Target:  5'- gGUGCGCGGCGGCGAACGUGCGCAGGAa -3'
miRNA:   3'- -CACGCGCCGCCGCUUGCACGCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 38961 0.68 0.355077
Target:  5'- -aGCGUGGCGGCGuugaaccgcGCGUaaucgguguugaGCGcCAGGGc -3'
miRNA:   3'- caCGCGCCGCCGCu--------UGCA------------CGC-GUCCU- -5'
18995 5' -61.1 NC_004684.1 + 10982 0.66 0.470199
Target:  5'- -aGCGCGaucaccgcGuCGGUGAACGUGCGgaAGGu -3'
miRNA:   3'- caCGCGC--------C-GCCGCUUGCACGCg-UCCu -5'
18995 5' -61.1 NC_004684.1 + 3787 0.71 0.235044
Target:  5'- -aGCGCGGCGGCGcuGgcgaucuccugccaGCGUGCcaaCAGGGu -3'
miRNA:   3'- caCGCGCCGCCGC--U--------------UGCACGc--GUCCU- -5'
18995 5' -61.1 NC_004684.1 + 20890 0.67 0.396964
Target:  5'- -cGuCGCGGCuGGCGuuGCGUGcCGguGGc -3'
miRNA:   3'- caC-GCGCCG-CCGCu-UGCAC-GCguCCu -5'
18995 5' -61.1 NC_004684.1 + 10248 0.66 0.441897
Target:  5'- -aGCGCGGUGGCcAGCG-GCgGCuGGc -3'
miRNA:   3'- caCGCGCCGCCGcUUGCaCG-CGuCCu -5'
18995 5' -61.1 NC_004684.1 + 60711 0.66 0.46066
Target:  5'- cUGCGCaugGGCG-ACGUGCGCcGGGu -3'
miRNA:   3'- cACGCGccgCCGCuUGCACGCGuCCU- -5'
18995 5' -61.1 NC_004684.1 + 8822 0.72 0.179246
Target:  5'- -gGCGCGGCGGCGAACaucgggaucaGCGCcgccauGGAg -3'
miRNA:   3'- caCGCGCCGCCGCUUGca--------CGCGu-----CCU- -5'
18995 5' -61.1 NC_004684.1 + 59625 0.73 0.153371
Target:  5'- -cGCGCuGGCGGUgcaGGACcuGUGCGCAGGc -3'
miRNA:   3'- caCGCG-CCGCCG---CUUG--CACGCGUCCu -5'
18995 5' -61.1 NC_004684.1 + 65444 0.71 0.230986
Target:  5'- -cGUGCGGCGcGCGGccacCGUGCGCcGGu -3'
miRNA:   3'- caCGCGCCGC-CGCUu---GCACGCGuCCu -5'
18995 5' -61.1 NC_004684.1 + 28728 0.69 0.30906
Target:  5'- -gGCGCGucuGCGGCaccGACGUGCGguGcGAg -3'
miRNA:   3'- caCGCGC---CGCCGc--UUGCACGCguC-CU- -5'
18995 5' -61.1 NC_004684.1 + 65773 0.69 0.294765
Target:  5'- -cGCGCGcCGGUGGGCGcGCGCAcGGc -3'
miRNA:   3'- caCGCGCcGCCGCUUGCaCGCGU-CCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.