miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18999 5' -60.9 NC_004684.1 + 20298 0.66 0.490188
Target:  5'- aGGCgaaaGGCUCuGCGCAGUUGuCGC-Ca -3'
miRNA:   3'- -CCGag--CCGAGcCGCGUCAGUcGCGuG- -5'
18999 5' -60.9 NC_004684.1 + 23776 0.66 0.490188
Target:  5'- gGGCgCGGCguugGGCGCGaugaUCGGCGCugGCg -3'
miRNA:   3'- -CCGaGCCGag--CCGCGUc---AGUCGCG--UG- -5'
18999 5' -60.9 NC_004684.1 + 12957 0.66 0.490188
Target:  5'- cGGCggCGGcCUCGGCGguGgcggccUCGGCcucCGCg -3'
miRNA:   3'- -CCGa-GCC-GAGCCGCguC------AGUCGc--GUG- -5'
18999 5' -60.9 NC_004684.1 + 35255 0.66 0.490188
Target:  5'- cGGUUcCGGCUCGGCcaccgAGUUGGUGCcCa -3'
miRNA:   3'- -CCGA-GCCGAGCCGcg---UCAGUCGCGuG- -5'
18999 5' -60.9 NC_004684.1 + 12004 0.66 0.490188
Target:  5'- cGGCccUGGCugUCGGUGguG-CcGCGCACg -3'
miRNA:   3'- -CCGa-GCCG--AGCCGCguCaGuCGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 4579 0.66 0.489207
Target:  5'- aGCUCGGCgggguuaCGGUaGCGGcCAacgacggccucgcGCGCACg -3'
miRNA:   3'- cCGAGCCGa------GCCG-CGUCaGU-------------CGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 13637 0.66 0.489207
Target:  5'- aGCcgaUGGCcgccaGGCGCAgcuccucgaacucGUCGGCGCACg -3'
miRNA:   3'- cCGa--GCCGag---CCGCGU-------------CAGUCGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 45769 0.66 0.487246
Target:  5'- uGGCUCGGCcuaccCGGUcaaaaaaccucuacGCgcagauGGUCGGcCGCGCg -3'
miRNA:   3'- -CCGAGCCGa----GCCG--------------CG------UCAGUC-GCGUG- -5'
18999 5' -60.9 NC_004684.1 + 32225 0.66 0.480415
Target:  5'- cGGUUCGGUaucgacagCGGCGCGaUCuacuGCGCGu -3'
miRNA:   3'- -CCGAGCCGa-------GCCGCGUcAGu---CGCGUg -5'
18999 5' -60.9 NC_004684.1 + 60351 0.66 0.480415
Target:  5'- cGUUCGGCcagCGGUGCcaGGUCGGUcagguuggGCAUg -3'
miRNA:   3'- cCGAGCCGa--GCCGCG--UCAGUCG--------CGUG- -5'
18999 5' -60.9 NC_004684.1 + 21360 0.66 0.480415
Target:  5'- gGGCgcgCGuGC-CGGgGUGGUUgaccuGGCGCACg -3'
miRNA:   3'- -CCGa--GC-CGaGCCgCGUCAG-----UCGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 7331 0.66 0.480415
Target:  5'- uGGCguagCGgauuuGCUCGGCGguGgCAGUGUAg -3'
miRNA:   3'- -CCGa---GC-----CGAGCCGCguCaGUCGCGUg -5'
18999 5' -60.9 NC_004684.1 + 59630 0.66 0.470738
Target:  5'- cGGCgCGcGCUggCGGUGCAGgacCuGUGCGCa -3'
miRNA:   3'- -CCGaGC-CGA--GCCGCGUCa--GuCGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 19357 0.66 0.470738
Target:  5'- uGGCUcCGGCUcCGGCGg---CAGgGCAUc -3'
miRNA:   3'- -CCGA-GCCGA-GCCGCgucaGUCgCGUG- -5'
18999 5' -60.9 NC_004684.1 + 25352 0.66 0.470738
Target:  5'- uGGcCUUGGCggCGGCcugauggaccCGGUCAGCGCcuACg -3'
miRNA:   3'- -CC-GAGCCGa-GCCGc---------GUCAGUCGCG--UG- -5'
18999 5' -60.9 NC_004684.1 + 59818 0.66 0.470738
Target:  5'- cGCUCaGCaUGGCGCGGUgcCGGUGUAg -3'
miRNA:   3'- cCGAGcCGaGCCGCGUCA--GUCGCGUg -5'
18999 5' -60.9 NC_004684.1 + 33871 0.66 0.470738
Target:  5'- cGUUCGGCcuaccaggCGGUGCGGgCGGUGC-Cg -3'
miRNA:   3'- cCGAGCCGa-------GCCGCGUCaGUCGCGuG- -5'
18999 5' -60.9 NC_004684.1 + 24363 0.66 0.461161
Target:  5'- aGCUCGGUgauuUCGGUgGCgAGcUGGCGCACc -3'
miRNA:   3'- cCGAGCCG----AGCCG-CG-UCaGUCGCGUG- -5'
18999 5' -60.9 NC_004684.1 + 64362 0.66 0.461161
Target:  5'- ---cCGG-UCGGCGCGGUCAGCucCAUg -3'
miRNA:   3'- ccgaGCCgAGCCGCGUCAGUCGc-GUG- -5'
18999 5' -60.9 NC_004684.1 + 49668 0.66 0.461161
Target:  5'- uGGaCUCGGCccauUCGGCGauaaCGGUgucCAGgGCACc -3'
miRNA:   3'- -CC-GAGCCG----AGCCGC----GUCA---GUCgCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.